(Q35877995)

10 August 2017

Developing a high-quality scoring function for membrane protein structures based on specific inter-residue interactions (English)

1 reference

10 August 2017

1 reference

Andrew J Heim

1

1 reference

PMCID

3322274

10 August 2017

Zhijun Li

series ordinal

2

1 reference

10 August 2017

1 March 2012

1 reference

Journal of Computer - Aided Molecular Design

10 August 2017

1 reference

10 August 2017

26

1 reference

10 August 2017

3

1 reference

10 August 2017

301-309

1 reference

https://scigraph.springernature.com/pub.10.1007/s10822-012-9556-z

10 August 2017

0 references

cites work

Status of GPCR modeling and docking as reflected by community-wide GPCR Dock 2010 assessment

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322274

Structure of an agonist-bound human A2A adenosine receptor

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322274

Community-wide assessment of GPCR structure modelling and ligand docking: GPCR Dock 2008.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322274

Artefacts and biases affecting the evaluation of scoring functions on decoy sets for protein structure prediction.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322274

Comparing four different approaches for the determination of inter-residue interactions provides insight for the structure prediction of helical membrane proteins.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322274

Network pattern of residue packing in helical membrane proteins and its application in membrane protein structure prediction.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322274

Clustal W and Clustal X version 2.0

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322274

Scoring function accuracy for membrane protein structure prediction.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322274

How many drug targets are there?

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322274

Assembly of transmembrane helices of simple polytopic membrane proteins from sequence conservation patterns

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322274

On the accuracy of homology modeling and sequence alignment methods applied to membrane proteins

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322274

A simple approach for protein structure discrimination based on the network pattern of conserved hydrophobic residues.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322274

Computational modeling approaches to structure-function analysis of G protein-coupled receptors

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322274

PDB_TM: selection and membrane localization of transmembrane proteins in the protein data bank

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322274

Analysis of side-chain rotamers in transmembrane proteins

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322274

Inter-residue interactions in protein folding and stability

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322274

Heavier-than-air flying machines are impossible.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322274

Activation of G-protein-coupled receptors: a common molecular mechanism

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322274

Can correct protein models be identified?

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322274

The CATH database: an extended protein family resource for structural and functional genomics

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322274

Genomic analysis of membrane protein families: abundance and conserved motifs

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322274

Comparison of helix interactions in membrane and soluble alpha-bundle proteins.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322274

Role of medium--and long-range interactions in discriminating globular and membrane proteins

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322274

Internal packing of helical membrane proteins

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322274

Riding the wave: structural and energetic principles of helical membrane proteins

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322274

11 July 2018

The Protein Data Bank

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322274

Genome-wide analysis of integral membrane proteins from eubacterial, archaean, and eukaryotic organisms

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322274

Comparative protein modelling by satisfaction of spatial restraints

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322274

Hydrogen bonding in globular proteins

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322274

Model quality assessment for membrane proteins.

11 July 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10822-012-9556-Z

Helix-helix packing and interfacial pairwise interactions of residues in membrane proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10822-012-9556-Z

Conserved network properties of helical membrane protein structures and its implication for improving membrane protein homology modeling at the twilight zone

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10822-012-9556-Z

A Novel Scoring Function for Predicting the Conformations of Tightly Packed Pairs of Transmembrane α-Helices

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10822-012-9556-Z

Three-dimensional models for agonist and antagonist complexes with beta 2 adrenergic receptor

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22395902

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Three-dimensional representations of G protein-coupled receptor structures and mechanisms

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22395902

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1007/S10822-012-9556-Z

1 reference

10 August 2017

journals/jcamd/HeimL12

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

10 August 2017

1 reference

PMCID

3322274