(Q35914254)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17478500%20AND%20SRC:MED&resulttype=core&format=json

30 December 2019

title

MODPROPEP: a program for knowledge-based modeling of protein-peptide complexes (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17478500%20AND%20SRC:MED&resulttype=core&format=json

30 December 2019

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17478500%20AND%20SRC:MED&resulttype=core&format=json

30 December 2019

author name string

Narendra Kumar

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17478500%20AND%20SRC:MED&resulttype=core&format=json

30 December 2019

language of work or name

English

0 references

publication date

3 May 2007

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17478500%20AND%20SRC:MED&resulttype=core&format=json

30 December 2019

published in

Nucleic Acids Research

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17478500%20AND%20SRC:MED&resulttype=core&format=json

30 December 2019

volume

35

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17478500%20AND%20SRC:MED&resulttype=core&format=json

30 December 2019

issue

Web Server issue

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17478500%20AND%20SRC:MED&resulttype=core&format=json

30 December 2019

page(s)

W549-55

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17478500%20AND%20SRC:MED&resulttype=core&format=json

Loop 2 of limulus myosin III is phosphorylated by protein kinase A and autophosphorylation

30 December 2019

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933231

kinDOCK: a tool for comparative docking of protein kinase ligands

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933231

KinasePhos: a web tool for identifying protein kinase-specific phosphorylation sites

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933231

GPS: a comprehensive www server for phosphorylation sites prediction

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933231

Dissecting the mechanism and assembly of a complex virulence mycobacterial lipid

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933231

Modeling the structure of bound peptide ligands to major histocompatibility complex

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933231

NRPS-PKS: a knowledge-based resource for analysis of NRPS/PKS megasynthases

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933231

Phospho.ELM: a database of experimentally verified phosphorylation sites in eukaryotic proteins

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933231

Prediction of post-translational glycosylation and phosphorylation of proteins from the amino acid sequence

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933231

A graph-theory algorithm for rapid protein side-chain prediction

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933231

Scansite 2.0: Proteome-wide prediction of cell signaling interactions using short sequence motifs

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933231

IMGT/HLA and IMGT/MHC: sequence databases for the study of the major histocompatibility complex

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933231

Structural basis and prediction of substrate specificity in protein serine/threonine kinases

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933231

Structure-based prediction of binding peptides to MHC class I molecules: application to a broad range of MHC alleles

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933231

An automated prediction of MHC class I-binding peptides based on positional scanning with peptide libraries

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933231

SYFPEITHI: database for MHC ligands and peptide motifs

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933231

11 July 2018

The Protein Data Bank

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933231

Pair potentials for protein folding: choice of reference states and sensitivity of predicted native states to variations in the interaction schemes

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933231

Knowledge-based structure prediction of MHC class I bound peptides: a study of 23 complexes

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933231

Mechanisms of MHC class I--restricted antigen processing

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933231

Adducin regulation. Definition of the calmodulin-binding domain and sites of phosphorylation by protein kinases A and C

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933231

Use of an oriented peptide library to determine the optimal substrates of protein kinases

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933231

Differential peptide dynamics is linked to major histocompatibility complex polymorphism

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933231

ProPred: prediction of HLA-DR binding sites.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933231

Residue-residue potentials with a favorable contact pair term and an unfavorable high packing density term, for simulation and threading.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933231

A structural switch of presenilin 1 by glycogen synthase kinase 3beta-mediated phosphorylation regulates the interaction with beta-catenin and its nuclear signaling

24 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17478500

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Introduction: protein kinases

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17478500

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Lessons to be learned from primary renal cell carcinomas: novel tumor antigens and HLA ligands for immunotherapy

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17478500

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKM266

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17478500%20AND%20SRC:MED&resulttype=core&format=json

30 December 2019

DBLP publication ID

journals/nar/KumarM07

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17478500%20AND%20SRC:MED&resulttype=core&format=json

30 December 2019

PubMed publication ID

17478500

1 reference