(Q35914861)

English

Analysis of the Saccharomyces cerevisiae pan-genome reveals a pool of copy number variants distributed in diverse yeast strains from differing industrial environments

scientific article published on 27 February 2012

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scholarly article

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Europe PubMed Central

PMC publication ID

11 August 2017

Analysis of the Saccharomyces cerevisiae pan-genome reveals a pool of copy number variants distributed in diverse yeast strains from differing industrial environments (English)

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

Saccharomyces cerevisiae

1 reference

based on heuristic

inferred from title

5

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

author name string

Barbara Dunn

1

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

Chandra Richter

2

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

Daniel J Kvitek

3

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

Tom Pugh

4

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

publication date

27 February 2012

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Europe PubMed Central

PMC publication ID

11 August 2017

Genome Research

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Europe PubMed Central

PMC publication ID

11 August 2017

22

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

5

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

908-924

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

The Awesome Power of Yeast Evolutionary Genetics: New Genome Sequences and Strain Resources for the Saccharomyces sensu stricto Genus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3337436

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Genomic structure of and genome-wide recombination in the Saccharomyces cerevisiae S288C progenitor isolate EM93.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3337436

11 July 2018

Microbe domestication and the identification of the wild genetic stock of lager-brewing yeast

1 reference

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11 July 2018

Hunger artists: yeast adapted to carbon limitation show trade-offs under carbon sufficiency

1 reference

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11 July 2018

Bread, beer and wine: yeast domestication in the Saccharomyces sensu stricto complex

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3337436

11 July 2018

Whole-genome comparison reveals novel genetic elements that characterize the genome of industrial strains of Saccharomyces cerevisiae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3337436

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Saccharomyces cerevisiae glycerol/H+ symporter Stl1p is essential for cold/near-freeze and freeze stress adaptation. A simple recipe with high biotechnological potential is given

1 reference

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Stampy: a statistical algorithm for sensitive and fast mapping of Illumina sequence reads

1 reference

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Gene duplication and environmental adaptation within yeast populations

1 reference

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The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

1 reference

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11 July 2018

Yeast evolutionary genomics

1 reference

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11 July 2018

PAD1 and FDC1 are essential for the decarboxylation of phenylacrylic acids in Saccharomyces cerevisiae.

1 reference

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11 July 2018

Rapid expansion and functional divergence of subtelomeric gene families in yeasts.

1 reference

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11 July 2018

Dynamic evolution of megasatellites in yeasts

1 reference

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11 July 2018

Industrial fuel ethanol yeasts contain adaptive copy number changes in genes involved in vitamin B1 and B6 biosynthesis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3337436

11 July 2018

Eukaryote-to-eukaryote gene transfer events revealed by the genome sequence of the wine yeast Saccharomyces cerevisiae EC1118.

1 reference

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11 July 2018

Insertion of horizontally transferred genes within conserved syntenic regions of yeast genomes

1 reference

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11 July 2018

Microsatellite analysis of genetic diversity among clinical and nonclinical Saccharomyces cerevisiae isolates suggests heterozygote advantage in clinical environments

1 reference

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11 July 2018

Fast and accurate short read alignment with Burrows-Wheeler transform

1 reference

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11 July 2018

Population genomics of domestic and wild yeasts

1 reference

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11 July 2018

Comprehensive polymorphism survey elucidates population structure of Saccharomyces cerevisiae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3337436

11 July 2018

The complex and dynamic genomes of industrial yeasts

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3337436

11 July 2018

A multispecies-based taxonomic microarray reveals interspecies hybridization and introgression in Saccharomyces cerevisiae

1 reference

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11 July 2018

Molecular characterization of clonal interference during adaptive evolution in asexual populations of Saccharomyces cerevisiae

1 reference

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11 July 2018

Comparative genomics of wild type yeast strains unveils important genome diversity

1 reference

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11 July 2018

NCBI GEO: archive for high-throughput functional genomic data

1 reference

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11 July 2018

Variations in stress sensitivity and genomic expression in diverse S. cerevisiae isolates

1 reference

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11 July 2018

A catalog of neutral and deleterious polymorphism in yeast

1 reference

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11 July 2018

Interspecies hybridization and recombination in Saccharomyces wine yeasts

1 reference

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11 July 2018

Molecular characterization of new natural hybrids of Saccharomyces cerevisiae and S. kudriavzevii in brewing.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3337436

11 July 2018

Natural populations of Saccharomyces kudriavzevii in Portugal are associated with oak bark and are sympatric with S. cerevisiae and S. paradoxus.

1 reference

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11 July 2018

Genome sequencing and comparative analysis of Saccharomyces cerevisiae strain YJM789.

1 reference

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11 July 2018

Bread, beer and wine: Saccharomyces cerevisiae diversity reflects human history

1 reference

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11 July 2018

The Stanford Microarray Database: implementation of new analysis tools and open source release of software

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11 July 2018

Sequence diversity, reproductive isolation and species concepts in Saccharomyces

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11 July 2018

Pure and mixed genetic lines of Saccharomyces bayanus and Saccharomyces pastorianus and their contribution to the lager brewing strain genome

1 reference

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11 July 2018

Application of Multi Locus Sequence Typing to the analysis of the biodiversity of indigenous Saccharomyces cerevisiae wine yeasts from Lebanon

1 reference

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11 July 2018

Ethanol can contribute to energy and environmental goals

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11 July 2018

Evidence for domesticated and wild populations of Saccharomyces cerevisiae

1 reference

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11 July 2018

2-micron circle plasmids do not reduce yeast life span

1 reference

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Contribution of horizontal gene transfer to the evolution of Saccharomyces cerevisiae

1 reference

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Yeast evolution and comparative genomics

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11 July 2018

Microarray karyotyping of commercial wine yeast strains reveals shared, as well as unique, genomic signatures

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The natural history of group I introns

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Fermented beverages of pre- and proto-historic China

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Caryoscope: an Open Source Java application for viewing microarray data in a genomic context

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Fungal epoxide hydrolases: new landmarks in sequence-activity space

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Evidence for S. cerevisiae fermentation in ancient wine

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Genome-wide amplifications caused by chromosomal rearrangements play a major role in the adaptive evolution of natural yeast.

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Genetic diversity in yeast assessed with whole-genome oligonucleotide arrays

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Characteristic genome rearrangements in experimental evolution of Saccharomyces cerevisiae

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New hybrids between Saccharomyces sensu stricto yeast species found among wine and cider production strains

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Electrophoretic karyotyping as a taxonomic tool in the genus Saccharomyces

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Tandem gene amplification mediates copper resistance in yeast

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The 2 micron circle plasmid of Saccharomyces cerevisiae

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Basic local alignment search tool

1 reference

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Intron 5 alpha of the COXI gene of yeast mitochondrial DNA is a mobile group I intron

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Computational approaches for the genetic and phenotypic characterization of a Saccharomyces cerevisiae wine yeast collection

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A database of microsatellite genotypes for Saccharomyces cerevisiae

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24 September 2018

Polymorphisms of Saccharomyces cerevisiae genes involved in wine production.

1 reference

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24 September 2018

Comparative genome analysis of a Saccharomyces cerevisiae wine strain

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24 September 2018

Multiple duplications of yeast hexose transport genes in response to selection in a glucose-limited environment

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https://pubmed.ncbi.nlm.nih.gov/22369888

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based on heuristic

inferred from PubMed ID database lookup

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1 reference

https://pubmed.ncbi.nlm.nih.gov/22369888

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

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https://pubmed.ncbi.nlm.nih.gov/22369888

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genome-wide genetic analysis of polyploidy in yeast

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https://pubmed.ncbi.nlm.nih.gov/22369888

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https://pubmed.ncbi.nlm.nih.gov/22369888

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based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1101/GR.130310.111

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

ResearchGate publication ID

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