(Q35999394)

11 August 2017

Comparative genomics of the Hedgehog loci in chordates and the origins of Shh regulatory novelties (English)

1 reference

11 August 2017

0 references

1 reference

1

1 reference

11 August 2017

Ignacio Maeso

4

0 references

Jose Luis Royo

Jose L Royo

2

0 references

Jordi Garcia-fernandez

Jordi Garcia-Fernandez

6

0 references

José Luis Gómez-Skarmeta

José L Gómez-Skarmeta

5

0 references

Demian Burguera

3

Demian Burguera

1 reference

PMC publication ID

3364491

11 August 2017

language of work or name

English

0 references

publication date

31 May 2012

1 reference

11 August 2017

1 reference

11 August 2017

2

1 reference

11 August 2017

433

1 reference

Creative Commons Attribution-NonCommercial-ShareAlike 3.0 Unported

11 August 2017

start time

31 May 2012

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

Ancient deuterostome origins of vertebrate brain signalling centres

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3364491

An ancient genomic regulatory block conserved across bilaterians and its dismantling in tetrapods by retrogene replacement

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3364491

Transphyletic conservation of developmental regulatory state in animal evolution

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3364491

Otic ablation of smoothened reveals direct and indirect requirements for Hedgehog signaling in inner ear development

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3364491

Using the Acropora digitifera genome to understand coral responses to environmental change

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3364491

Contrasting 5' and 3' evolutionary histories and frequent evolutionary convergence in Meis/hth gene structures

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3364491

Copy-number variations involving the IHH locus are associated with syndactyly and craniosynostosis

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3364491

Conservation of shh cis-regulatory architecture of the coelacanth is consistent with its ancestral phylogenetic position

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3364491

Two lamprey Hedgehog genes share non-coding regulatory sequences and expression patterns with gnathostome Hedgehogs

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3364491

Planarian Hh signaling regulates regeneration polarity and links Hh pathway evolution to cilia

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3364491

Hedgehog: functions and mechanisms

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3364491

The amphioxus genome and the evolution of the chordate karyotype

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3364491

The amphioxus genome illuminates vertebrate origins and cephalochordate biology

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3364491

The Hedgehog gene family of the cnidarian, Nematostella vectensis, and implications for understanding metazoan Hedgehog pathway evolution

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3364491

Genomic regulatory blocks underlie extensive microsynteny conservation in insects

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3364491

An amphioxus Gli gene reveals conservation of midline patterning and the evolution of hedgehog signalling diversity in chordates

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3364491

Phylogenetic position of a whale-fall lancelet (Cephalochordata) inferred from whole mitochondrial genome sequences

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3364491

Expression of 'segmentation' genes during larval and juvenile development in the polychaetes Capitella sp. I and H. elegans

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3364491

The mechanisms of dorsoventral patterning in the vertebrate neural tube

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3364491

ProtTest: selection of best-fit models of protein evolution

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3364491

Hedgehog signaling from the ZLI regulates diencephalic regional identity

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3364491

Phylogenetic conservation of a limb-specific, cis-acting regulator of Sonic hedgehog ( Shh)

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3364491

MrBayes 3: Bayesian phylogenetic inference under mixed models

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3364491

A long-range Shh enhancer regulates expression in the developing limb and fin and is associated with preaxial polydactyly

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3364491

The ascidian tadpole larva: comparative molecular development and genomics

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3364491

LAGAN and Multi-LAGAN: efficient tools for large-scale multiple alignment of genomic DNA

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3364491

Disruption of a long-range cis-acting regulator for Shh causes preaxial polydactyly

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3364491

Hedgehog signaling in animal development: paradigms and principles

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3364491

MRBAYES: Bayesian inference of phylogenetic trees

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3364491

VISTA : visualizing global DNA sequence alignments of arbitrary length

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3364491

Sonic hedgehog signaling pathway in vertebrate epithelial appendage morphogenesis: perspectives in development and evolution

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3364491

The evolution of the hedgehog gene family in chordates: insights from amphioxus hedgehog.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3364491

Consed: a graphical tool for sequence finishing

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3364491

Base-calling of automated sequencer traces using phred. II. Error probabilities

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3364491

Base-calling of automated sequencer traces using phred. I. Accuracy assessment

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3364491

Sonic hedgehog mediates the polarizing activity of the ZPA

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3364491

Sonic hedgehog, a member of a family of putative signaling molecules, is implicated in the regulation of CNS polarity

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3364491

Mutations affecting segment number and polarity in Drosophila

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3364491

Conserved developmental expression of Fezf in chordates and Drosophila and the origin of the Zona Limitans Intrathalamica (ZLI) brain organizer

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3364491

Ontogenetic expression of sonic hedgehog in the chicken subpallium.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3364491

Deeply conserved chordate noncoding sequences preserve genome synteny but do not drive gene duplicate retention

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3364491

Hedgehog signaling patterns mesoderm in the sea urchin

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3364491

Intronic enhancers control expression of zebrafish sonic hedgehog in floor plate and notochord.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3364491

Expression of axial and sonic hedgehog in wildtype and midline defective zebrafish embryos.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3364491

Genomic regulatory blocks encompass multiple neighboring genes and maintain conserved synteny in vertebrates

11 July 2018

1 reference

A cluster of three long-range enhancers directs regional Shh expression in the epithelial linings.

21 January 2018

1 reference

(Re)inventing the circadian feedback loop

21 January 2018

1 reference

Highly conserved regulatory elements around the SHH gene may contribute to the maintenance of conserved synteny across human chromosome 7q36.3.

21 January 2018

1 reference

A functional screen for sonic hedgehog regulatory elements across a 1 Mb interval identifies long-range ventral forebrain enhancers.

21 January 2018

1 reference

Elimination of a long-range cis-regulatory module causes complete loss of limb-specific Shh expression and truncation of the mouse limb.

21 January 2018

1 reference

Cooperation of sonic hedgehog enhancers in midline expression.

21 January 2018

1 reference

An autopodial-like pattern of Hox expression in the fins of a basal actinopterygian fish.

21 January 2018

1 reference

Organisation of the lamprey (Lampetra fluviatilis) embryonic brain: insights from LIM-homeodomain, Pax and hedgehog genes

21 January 2018

1 reference

Distinct regulators of Shh transcription in the floor plate and notochord indicate separate origins for these tissues in the mouse node.

21 January 2018

1 reference

Midline signaling and evolution of the forebrain in chordates: a focus on the lamprey Hedgehog case

21 January 2018

1 reference

Sonic hedgehog function in chondrichthyan fins and the evolution of appendage patterning.

21 January 2018

1 reference

Unexpectedly large number of conserved noncoding regions within the ancestral chordate Hox cluster

21 January 2018

1 reference

Cis-regulatory characterization of sequence conservation surrounding the Hox4 genes.

21 January 2018

1 reference

Conservation and elaboration of Hox gene regulation during evolution of the vertebrate head.

21 January 2018

1 reference

Evidence that mechanisms of fin development evolved in the midline of early vertebrates.

21 January 2018

1 reference

Amphioxus alcohol dehydrogenase is a class 3 form of single type and of structural conservation but with unique developmental expression.

21 January 2018

1 reference

Gene expansion and retention leads to a diverse tyrosine kinase superfamily in amphioxus

21 January 2018

1 reference

Odd-skipped genes encode repressors that control kidney development.

21 January 2018

1 reference

Regionalization of Sonic hedgehog transcription along the anteroposterior axis of the mouse central nervous system is regulated by Hnf3-dependent and -independent mechanisms.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3364491

Zebrafish enhancer detection (ZED) vector: A new tool to facilitate transgenesis and the functional analysis ofcis-regulatory regions in zebrafish

23 September 2018

1 reference

Evolution of the mitochondrial genome in cephalochordata as inferred from complete nucleotide sequences from two epigonichthys species

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22666536

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Distribution of Sonic hedgehog peptides in the developing chick and mouse embryo

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22666536

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

New complete mitochondrial DNA sequence of the lancelet Branchiostoma lanceolatum (Cephalochordata) and the identity of this species' sequences

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22666536

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/SREP00433

1 reference

11 August 2017

1 reference

PMC publication ID

3364491

11 August 2017

PubMed publication ID

22666536

1 reference

PMC publication ID

3364491