(Q36000569)

English

Pyrobaculum yellowstonensis Strain WP30 Respires on Elemental Sulfur and/or Arsenate in Circumneutral Sulfidic Geothermal Sediments of Yellowstone National Park

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scholarly article

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Europe PubMed Central

PMC publication ID

11 August 2017

Pyrobaculum yellowstonensis Strain WP30 Respires on Elemental Sulfur and/or Arsenate in Circumneutral Sulfidic Geothermal Sediments of Yellowstone National Park (English)

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

Margaret F Romine

7

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Europe PubMed Central

PMC publication ID

11 August 2017

Britta Planer-Friedrich

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B Planer-Friedrich

6

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author name string

Z J Jay

1

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Europe PubMed Central

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11 August 2017

J P Beam

2

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Europe PubMed Central

PMC publication ID

11 August 2017

A Dohnalkova

3

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

R Lohmayer

4

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Europe PubMed Central

PMC publication ID

11 August 2017

B Bodle

5

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Europe PubMed Central

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11 August 2017

W P Inskeep

8

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11 August 2017

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publication date

19 June 2015

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Europe PubMed Central

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11 August 2017

Applied and Environmental Microbiology

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Europe PubMed Central

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11 August 2017

81

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Europe PubMed Central

PMC publication ID

11 August 2017

17

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

5907-5916

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

The distribution, diversity, and importance of 16S rRNA gene introns in the order Thermoproteales

1 reference

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Carbon Dioxide Fixation by Metallosphaera yellowstonensis and Acidothermophilic Iron-Oxidizing Microbial Communities from Yellowstone National Park

1 reference

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Integrating genomics into the taxonomy and systematics of the Bacteria and Archaea

1 reference

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2 October 2017

Predominant Acidilobus-like populations from geothermal environments in yellowstone national park exhibit similar metabolic potential in different hypoxic microbial communities

1 reference

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2 October 2017

Phylogenetic and Functional Analysis of Metagenome Sequence from High-Temperature Archaeal Habitats Demonstrate Linkages between Metabolic Potential and Geochemistry

1 reference

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2 October 2017

Genome sequence-based species delimitation with confidence intervals and improved distance functions

1 reference

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2 October 2017

Microbial community structure and sulfur biogeochemistry in mildly-acidic sulfidic geothermal springs in Yellowstone National Park

1 reference

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2 October 2017

X-ray structure of the fourth type of archaeal tRNA splicing endonuclease: insights into the evolution of a novel three-unit composition and a unique loop involved in broad substrate specificity

1 reference

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2 October 2017

Microbial iron cycling in acidic geothermal springs of yellowstone national park: integrating molecular surveys, geochemical processes, and isolation of novel fe-active microorganisms

1 reference

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2 October 2017

The complete genome sequence of Thermoproteus tenax: a physiologically versatile member of the Crenarchaeota

1 reference

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Mauve assembly metrics

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2 October 2017

The cytochrome bd respiratory oxygen reductases

1 reference

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2 October 2017

A bioinformatics classifier and database for heme-copper oxygen reductases.

1 reference

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2 October 2017

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

1 reference

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2 October 2017

Discovery of permuted and recently split transfer RNAs in Archaea

1 reference

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2 October 2017

Hydrothermal ecotones and streamer biofilm communities in the Lower Geyser Basin, Yellowstone National Park

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4551270

2 October 2017

progressiveMauve: multiple genome alignment with gene gain, loss and rearrangement

1 reference

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2 October 2017

Autotrophic carbon fixation in archaea.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4551270

2 October 2017

Metagenomes from high-temperature chemotrophic systems reveal geochemical controls on microbial community structure and function

1 reference

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2 October 2017

Gene context analysis in the Integrated Microbial Genomes (IMG) data management system

1 reference

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2 October 2017

InParanoid 7: new algorithms and tools for eukaryotic orthology analysis

1 reference

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2 October 2017

Shifting the genomic gold standard for the prokaryotic species definition

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4551270

2 October 2017

Study of the distribution of autotrophic CO2 fixation cycles in Crenarchaeota.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4551270

2 October 2017

IMG ER: a system for microbial genome annotation expert review and curation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4551270

2 October 2017

Autotrophic carbon dioxide assimilation in Thermoproteales revisited

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4551270

2 October 2017

Transcriptional map of respiratory versatility in the hyperthermophilic crenarchaeon Pyrobaculum aerophilum.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4551270

2 October 2017

Enzyme phylogenies as markers for the oxidation state of the environment: the case of respiratory arsenate reductase and related enzymes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4551270

2 October 2017

Molecular mechanism of energy conservation in polysulfide respiration

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4551270

2 October 2017

The RAST Server: rapid annotations using subsystems technology

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2 October 2017

A 3-hydroxypropionate/4-hydroxybutyrate autotrophic carbon dioxide assimilation pathway in Archaea

1 reference

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2 October 2017

Citric acid cycle in the hyperthermophilic archaeon Pyrobaculum islandicum grown autotrophically, heterotrophically, and mixotrophically with acetate

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4551270

2 October 2017

Role of Polysulfides in Reduction of Elemental Sulfur by the Hyperthermophilic Archaebacterium Pyrococcus furiosus.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4551270

2 October 2017

Homing endonuclease structure and function

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4551270

2 October 2017

The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4551270

2 October 2017

ACT: the Artemis Comparison Tool

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4551270

2 October 2017

MUSCLE: multiple sequence alignment with high accuracy and high throughput

1 reference

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2 October 2017

Genome sequence of the hyperthermophilic crenarchaeon Pyrobaculum aerophilum

1 reference

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Sugar transport in Sulfolobus solfataricus is mediated by two families of binding protein-dependent ABC transporters

1 reference

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Caldivirga maquilingensis gen. nov., sp. nov., a new genus of rod-shaped crenarchaeote isolated from a hot spring in the Philippines

1 reference

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2 October 2017

PPi-dependent phosphofructokinase from Thermoproteus tenax, an archaeal descendant of an ancient line in phosphofructokinase evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4551270

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tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence

1 reference

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2 October 2017

An intron within the 16S ribosomal RNA gene of the archaeon Pyrobaculum aerophilum.

1 reference

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The superfamily of heme-copper respiratory oxidases

1 reference

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Principles of organization in eubacterial and archaebacterial surface proteins.

1 reference

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Structural features of archaebacterial cell envelopes

1 reference

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Constraints on anaerobic respiration in the hyperthermophilic Archaea Pyrobaculum islandicum and Pyrobaculum aerophilum

1 reference

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An archaeal homing endonuclease I-PogI cleaves at the insertion site of the neighboring intron, which has no nested open reading frame

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4551270

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Distribution of 16S rRNA introns among the family Thermoproteaceae and their evolutionary implications

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4551270

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Cytochrome bd terminal oxidase

1 reference

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11 July 2018

Structural characteristics of the stable RNA introns of archaeal hyperthermophiles and their splicing junctions.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4551270

11 July 2018

Chemolithotrophic growth of the aerobic hyperthermophilic bacterium Thermocrinis ruber OC 14/7/2 on monothioarsenate and arsenite

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4551270

23 September 2018

Accurate and universal delineation of prokaryotic species

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4551270

23 September 2018

Reclassification of Thermoproteus neutrophilus Stetter and Zillig 1989 as Pyrobaculum neutrophilum comb. nov. based on phylogenetic analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4551270

23 September 2018

Thioarsenate transformation by filamentous microbial mats thriving in an alkaline, sulfidic hot spring.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4551270

23 September 2018

Identification of missing genes and enzymes for autotrophic carbon fixation in crenarchaeota

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4551270

23 September 2018

Comprehensive analysis of archaeal tRNA genes reveals rapid increase of tRNA introns in the order thermoproteales

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4551270

23 September 2018

RNA recognition and cleavage by a splicing endonuclease.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4551270

23 September 2018

Cytochrome aa3 in facultatively aerobic and hyperthermophilic archaeon Pyrobaculum oguniense.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4551270

23 September 2018

Regulation of the aerobic respiratory chain in the facultatively aerobic and hyperthermophilic archaeon Pyrobaculum oguniense

1 reference

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23 September 2018

Sequence, expression, and characterization of the first archaeal ATP-dependent 6-phosphofructokinase, a non-allosteric enzyme related to the phosphofructokinase-B sugar kinase family, from the hyperthermophilic crenarchaeote Aeropyrum pernix

1 reference

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23 September 2018

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1 reference

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23 September 2018

Archaeal phylogeny based on ribosomal proteins

1 reference

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23 September 2018

FORMATION OF METHANE BY BACTERIAL EXTRACTS

1 reference

https://pubmed.ncbi.nlm.nih.gov/26092468

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Equilibrium distribution of polysulfide ions in aqueous solutions at different temperatures by rapid single phase derivatization

1 reference

https://pubmed.ncbi.nlm.nih.gov/26092468

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Method for the determination of inorganic polysulfide distribution in aquatic systems

1 reference

https://pubmed.ncbi.nlm.nih.gov/26092468

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Thioarsenates in Geothermal Waters of Yellowstone National Park: Determination, Preservation, and Geochemical Importance

1 reference

https://pubmed.ncbi.nlm.nih.gov/26092468

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Discrimination of Thioarsenites and Thioarsenates by X-ray Absorption Spectroscopy

1 reference

https://pubmed.ncbi.nlm.nih.gov/26092468

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Conservation of substrate recognition mechanisms by tRNA splicing endonucleases

1 reference

https://pubmed.ncbi.nlm.nih.gov/26092468

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Determination of (Oxy)thioarsenates in sulfidic waters

1 reference

https://pubmed.ncbi.nlm.nih.gov/26092468

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1128/AEM.01095-15

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

ResearchGate publication ID

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