(Q36011715)

11 August 2017

Complete genome sequence of Paenibacillus sp. strain JDR-2. (English)

1 reference

11 August 2017

0 references

whole genome sequencing

1 reference

17

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11 August 2017

11

Tanja Woyke

0 references

Franz J St John

object named as

Franz J St John

3

0 references

Sam Pitluck

12

object named as

Sam Pitluck

1 reference

11 August 2017

14

Amrita Pati

1 reference

11 August 2017

18

Lynne Goodwin

1 reference

11 August 2017

13

Matt Nolan

1 reference

11 August 2017

16

Alex Copeland

1 reference

11 August 2017

6

Olga Chertkov

1 reference

11 August 2017

7

David Bruce

1 reference

11 August 2017

20

Lonnie O Ingram

1 reference

11 August 2017

8

Chris Detter

1 reference

11 August 2017

Virginia Chow

1

1 reference

11 August 2017

Guang Nong

2

1 reference

11 August 2017

John D Rice

4

1 reference

11 August 2017

Ellen Dickstein

5

1 reference

11 August 2017

Thomas Brettin

9

1 reference

11 August 2017

James Han

10

1 reference

11 August 2017

Joel Martin

15

1 reference

11 August 2017

Jeffrey B Jones

19

1 reference

11 August 2017

Keelnathan T Shanmugam

21

1 reference

11 August 2017

James F Preston

22

1 reference

11 August 2017

5 March 2012

1 reference

Standards in genomic sciences

11 August 2017

1 reference

11 August 2017

6

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11 August 2017

1

1 reference

11 August 2017

1-10

1 reference

https://scigraph.springernature.com/pub.10.4056/sigs.2374349

11 August 2017

0 references

cites work

Genome sequence of the pattern forming Paenibacillus vortex bacterium reveals potential for thriving in complex environments

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368403

Complete genome sequence of Paenibacillus polymyxa SC2, a strain of plant growth-promoting Rhizobacterium with broad-spectrum antimicrobial activity

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368403

Genome sequence of the polymyxin-producing plant-probiotic rhizobacterium Paenibacillus polymyxa E681.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368403

Prodigal: prokaryotic gene recognition and translation initiation site identification

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368403

The innate immune and systemic response in honey bees to a bacterial pathogen, Paenibacillus larvae

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368403

The minimum information about a genome sequence (MIGS) specification

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368403

Structure, function, and regulation of the aldouronate utilization gene cluster from Paenibacillus sp. strain JDR-2.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368403

MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368403

RNAmmer: consistent and rapid annotation of ribosomal RNA genes

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368403

Paenibacillus sp. strain JDR-2 and XynA1: a novel system for methylglucuronoxylan utilization

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368403

Genome sequencing in microfabricated high-density picolitre reactors

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368403

Improved prediction of signal peptides: SignalP 3.0

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368403

Rfam: an RNA family database

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368403

Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368403

Gene ontology: tool for the unification of biology

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368403

Consed: a graphical tool for sequence finishing

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368403

Base-calling of automated sequencer traces using phred. II. Error probabilities

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368403

Base-calling of automated sequencer traces using phred. I. Accuracy assessment

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368403

tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368403

Molecular identification of rRNA group 3 bacilli (Ash, Farrow, Wallbanks and Collins) using a PCR probe test. Proposal for the creation of a new genus Paenibacillus

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368403

Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368403

Use of PCR-targeted mutagenesis to disrupt production of fusaricidin-type antifungal antibiotics in Paenibacillus polymyxa

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368403

Aldouronate utilization in Paenibacillus sp. strain JDR-2: Physiological and enzymatic evidence for coupling of extracellular depolymerization and intracellular metabolism

11 July 2018

1 reference

https://api.crossref.org/works/10.4056%2FSIGS.2374349

List of new names and new combinations previously effectively, but not validly, published

21 January 2018

1 reference

https://api.crossref.org/works/10.4056%2FSIGS.2374349

Approved Lists of Bacterial Names

21 January 2018

1 reference

https://api.crossref.org/works/10.4056%2FSIGS.2374349

Validation of the Publication of New Names and New Combinations Previously Effectively Published Outside the IJSB: List No. 51

21 January 2018

1 reference

https://api.crossref.org/works/10.4056%2FSIGS.2374349

Taxonomic note: necessary correction of specific and subspecific epithets according to Rules 12c and 13b of the International Code of Nomenclature of Bacteria (1990 Revision)

21 January 2018

1 reference

https://api.crossref.org/works/10.4056%2FSIGS.2374349

What is the type species of the genus Paenibacillus? Request for an Opinion

21 January 2018

1 reference

https://api.crossref.org/works/10.4056%2FSIGS.2374349

The type species of the genus Paenibacillus Ash et al. 1994 is Paenibacillus polymyxa. Opinion 77.

21 January 2018

1 reference

https://api.crossref.org/works/10.4056%2FSIGS.2374349

List of new names and new combinations previously effectively, but not validly, published

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368403

Validation of publication of new names and new combinations previously effectively published outside the IJSB

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368403

23 September 2018

Identifiers

DOI

10.4056/SIGS.2374349

1 reference

Dimensions Publication ID

11 August 2017

0 references

1 reference

11 August 2017

PubMed publication ID

22675593

1 reference