(Q36011731)

11 August 2017

Complete genome sequence of the melanogenic marine bacterium Marinomonas mediterranea type strain (MMB-1(T)) (English)

1 reference

11 August 2017

0 references

whole genome sequencing

1 reference

1 reference

6

1 reference

11 August 2017

14

1 reference

11 August 2017

15

1 reference

11 August 2017

12

Roxanne Tapia

0 references

Tanja Woyke

series ordinal

3

object named as

Tanja Woyke

0 references

Antonio Sanchez-Amat

object named as

Antonio Sanchez-Amat

series ordinal

18

0 references

Sam Pitluck

series ordinal

4

object named as

Sam Pitluck

1 reference

11 August 2017

2

Lynne Goodwin

1 reference

11 August 2017

16

Natalia Mikhailova

1 reference

11 August 2017

5

Matt Nolan

1 reference

11 August 2017

8

Alex Copeland

1 reference

11 August 2017

10

David Bruce

1 reference

11 August 2017

13

Shunsheng Han

1 reference

11 August 2017

9

Hazuki Teshima

1 reference

11 August 2017

1

Patricia Lucas-Elío

1 reference

11 August 2017

7

Janine C Detter

1 reference

11 August 2017

11

Chris Detter

1 reference

11 August 2017

Andrew W B Johnston

17

1 reference

11 August 2017

5 March 2012

1 reference

Standards in genomic sciences

11 August 2017

1 reference

11 August 2017

6

1 reference

11 August 2017

1

1 reference

11 August 2017

63-73

1 reference

Marinomonas alcarazii sp. nov., M. rhizomae sp. nov., M. foliarum sp. nov., M. posidonica sp. nov. and M. aquiplantarum sp. nov., isolated from the microbiota of the seagrass Posidonia oceanica.

11 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368407

Marinomonas brasilensis sp. nov., isolated from the coral Mussismilia hispida, and reclassification of Marinomonas basaltis as a later heterotypic synonym of Marinomonas communis.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368407

Prodigal: prokaryotic gene recognition and translation initiation site identification

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368407

Taxonomic study of Marinomonas strains isolated from the seagrass Posidonia oceanica, with descriptions of Marinomonas balearica sp. nov. and Marinomonas pollencensis sp. nov.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368407

IMG ER: a system for microbial genome annotation expert review and curation

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368407

Hydrogen peroxide linked to lysine oxidase activity facilitates biofilm differentiation and dispersal in several gram-negative bacteria

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368407

The minimum information about a genome sequence (MIGS) specification

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368407

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368407

MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368407

RNAmmer: consistent and rapid annotation of ribosomal RNA genes

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368407

Structural and regulatory genes required to make the gas dimethyl sulfide in bacteria

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368407

A novel type of lysine oxidase: L-lysine-epsilon-oxidase.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368407

Novel polyphenol oxidase mined from a metagenome expression library of bovine rumen: biochemical properties, structural analysis, and phylogenetic relationships.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368407

Laccases: blue enzymes for green chemistry.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368407

The antimicrobial activity of marinocine, synthesized by Marinomonas mediterranea, is due to hydrogen peroxide generated by its lysine oxidase activity

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368407

Genome sequencing in microfabricated high-density picolitre reactors

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368407

Improved prediction of signal peptides: SignalP 3.0

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368407

Rfam: an RNA family database

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368407

Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368407

Marinomonas mediterranea MMB-1 transposon mutagenesis: isolation of a multipotent polyphenol oxidase mutant

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368407

Gene ontology: tool for the unification of biology

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368407

Studies on the phylogenetic relationships of melanogenic marine bacteria: proposal of Marinomonas mediterranea sp. nov.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368407

Consed: a graphical tool for sequence finishing

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368407

Base-calling of automated sequencer traces using phred. II. Error probabilities

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368407

Base-calling of automated sequencer traces using phred. I. Accuracy assessment

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368407

tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence

2 October 2017

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368407

2 October 2017

https://api.crossref.org/works/10.4056%2FSIGS.2545743

Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368407

Both genes in the Marinomonas mediterranea lodAB operon are required for the expression of the antimicrobial protein lysine oxidase

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368407

Identification of an operon involved in tyrosinase activity and melanin synthesis in Marinomonas mediterranea

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368407

Molecular cloning and functional characterization of a unique multipotent polyphenol oxidase from Marinomonas mediterranea

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368407

Regulation of the Marinomonas mediterranea antimicrobial protein lysine oxidase by L-lysine and the sensor histidine kinase PpoS.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368407

GenePRIMP: a gene prediction improvement pipeline for prokaryotic genomes

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368407

Isolation and Characterization of Strain MMB-1 (CECT 4803), a Novel Melanogenic Marine Bacterium.

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368407

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368407

Marinomonas mediterranea is a lysogenic bacterium that synthesizes R-bodies

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368407

Validation of the Publication of New Names and New Combinations Previously Effectively Published Outside the IJSB: List No. 40

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368407

Involvement of a novel copper chaperone in tyrosinase activity and melanin synthesis in Marinomonas mediterranea

23 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22675599

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Location and catalytic characteristics of a multipotent bacterial polyphenol oxidase

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22675599

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.4056/SIGS.2545743

1 reference

PMC publication ID

3368407

Dimensions Publication ID

11 August 2017

0 references

1 reference

PMC publication ID

3368407

11 August 2017

PubMed publication ID

22675599

1 reference

PMC publication ID

3368407