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siRNA Design Software for a Target Gene-Specific RNA Interference.
scientific article
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instance of
scholarly article
1 reference
stated in
Europe PubMed Central
PMCID
3371628
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22701467%20AND%20SRC:MED&resulttype=core&format=json
retrieved
5 February 2020
title
siRNA Design Software for a Target Gene-Specific RNA Interference
(English)
1 reference
stated in
Europe PubMed Central
PMCID
3371628
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22701467%20AND%20SRC:MED&resulttype=core&format=json
retrieved
5 February 2020
main subject
RNA design
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software
0 references
RNA interference
1 reference
based on heuristic
inferred from title
author
Yuki Naito
series ordinal
1
1 reference
stated in
Europe PubMed Central
PMCID
3371628
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22701467%20AND%20SRC:MED&resulttype=core&format=json
retrieved
5 February 2020
author name string
Kumiko Ui-Tei
series ordinal
2
1 reference
stated in
Europe PubMed Central
PMCID
3371628
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22701467%20AND%20SRC:MED&resulttype=core&format=json
retrieved
5 February 2020
publication date
11 June 2012
1 reference
stated in
Europe PubMed Central
PMCID
3371628
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22701467%20AND%20SRC:MED&resulttype=core&format=json
retrieved
5 February 2020
published in
Frontiers in Genetics
1 reference
stated in
Europe PubMed Central
PMCID
3371628
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22701467%20AND%20SRC:MED&resulttype=core&format=json
retrieved
5 February 2020
volume
3
1 reference
stated in
Europe PubMed Central
PMCID
3371628
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22701467%20AND%20SRC:MED&resulttype=core&format=json
retrieved
5 February 2020
page(s)
102
1 reference
stated in
Europe PubMed Central
PMCID
3371628
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22701467%20AND%20SRC:MED&resulttype=core&format=json
retrieved
5 February 2020
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2 October 2017
Design and evaluation of genome-wide libraries for RNA interference screens
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2 October 2017
Structural basis for 5'-nucleotide base-specific recognition of guide RNA by human AGO2
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2 October 2017
siDirect 2.0: updated software for designing functional siRNA with reduced seed-dependent off-target effect
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2 October 2017
The promises and pitfalls of RNA-interference-based therapeutics
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2 October 2017
AsiDesigner: exon-based siRNA design server considering alternative splicing
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2 October 2017
siRNA specificity searching incorporating mismatch tolerance data
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2 October 2017
Efficient siRNA selection using hybridization thermodynamics
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2 October 2017
MicroRNA targeting specificity in mammals: determinants beyond seed pairing
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2 October 2017
sIR: siRNA Information Resource, a web-based tool for siRNA sequence design and analysis and an open access siRNA database
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2 October 2017
More complete gene silencing by fewer siRNAs: transparent optimized design and biophysical signature
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2 October 2017
An accurate and interpretable model for siRNA efficacy prediction
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2 October 2017
3' UTR seed matches, but not overall identity, are associated with RNAi off-targets
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2 October 2017
Cleavage of the siRNA passenger strand during RISC assembly in human cells
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2 October 2017
Passenger-strand cleavage facilitates assembly of siRNA into Ago2-containing RNAi enzyme complexes
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2 October 2017
Argonaute2 cleaves the anti-guide strand of siRNA during RISC activation
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371628
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2 October 2017
Crystal structure of A. aeolicus argonaute, a site-specific DNA-guided endoribonuclease, provides insights into RISC-mediated mRNA cleavage
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371628
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2 October 2017
Structural basis for 5'-end-specific recognition of guide RNA by the A. fulgidus Piwi protein
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PubMed Central
reference URL
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2 October 2017
Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371628
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2 October 2017
Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371628
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2 October 2017
Sfold web server for statistical folding and rational design of nucleic acids
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371628
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2 October 2017
siRNA Selection Server: an automated siRNA oligonucleotide prediction server
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371628
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2 October 2017
DEQOR: a web-based tool for the design and quality control of siRNAs
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371628
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2 October 2017
Guidelines for the selection of highly effective siRNA sequences for mammalian and chick RNA interference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371628
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2 October 2017
Rational siRNA design for RNA interference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371628
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2 October 2017
Functional siRNAs and miRNAs Exhibit Strand Bias
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371628
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2 October 2017
Asymmetry in the assembly of the RNAi enzyme complex
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371628
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2 October 2017
Expression profiling reveals off-target gene regulation by RNAi
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371628
retrieved
2 October 2017
Single-stranded antisense siRNAs guide target RNA cleavage in RNAi
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stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371628
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2 October 2017
Analysis of gene function in somatic mammalian cells using small interfering RNAs
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371628
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2 October 2017
Argonaute2, a link between genetic and biochemical analyses of RNAi
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371628
retrieved
2 October 2017
Duplexes of 21-nucleotide RNAs mediate RNA interference in cultured mammalian cells
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371628
retrieved
2 October 2017
Thermodynamic stability and Watson-Crick base pairing in the seed duplex are major determinants of the efficiency of the siRNA-based off-target effect.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371628
retrieved
11 July 2018
Widespread siRNA "off-target" transcript silencing mediated by seed region sequence complementarity
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371628
retrieved
11 July 2018
siDRM: an effective and generally applicable online siRNA design tool.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371628
retrieved
23 September 2018
OptiRNAi, an RNAi design tool.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371628
retrieved
23 September 2018
An algorithm for selection of functional siRNA sequences.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371628
retrieved
23 September 2018
Identifiers
DOI
10.3389/FGENE.2012.00102
1 reference
stated in
Europe PubMed Central
PMCID
3371628
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22701467%20AND%20SRC:MED&resulttype=core&format=json
retrieved
5 February 2020
PMCID
3371628
1 reference
stated in
Europe PubMed Central
PMCID
3371628
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22701467%20AND%20SRC:MED&resulttype=core&format=json
retrieved
5 February 2020
PubMed ID
22701467
1 reference
stated in
Europe PubMed Central
PMCID
3371628
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22701467%20AND%20SRC:MED&resulttype=core&format=json
retrieved
5 February 2020
ResearchGate publication ID
225376572
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