(Q36026783)

11 August 2017

1 reference

title

Promoters in the environment: transcriptional regulation in its natural context (English)

1 reference

11 August 2017

1

1 reference

11 August 2017

2

1 reference

11 August 2017

language of work or name

English

0 references

publication date

1 February 2005

1 reference

Nature Reviews Microbiology

11 August 2017

published in

1 reference

11 August 2017

volume

3

1 reference

11 August 2017

issue

2

1 reference

11 August 2017

page(s)

105-118

1 reference

https://scigraph.springernature.com/pub.10.1038/nrmicro1084

11 August 2017

exact match

0 references

cites work

The evolution of genetic regulatory systems in bacteria

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

DNA topology-mediated control of global gene expression in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

Osmo-regulation of bacterial transcription via poised RNA polymerase

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

Cleaning up with genomics: applying molecular biology to bioremediation

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

Genomic and mechanistic insights into the biodegradation of organic pollutants

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

Bacterial community dynamics during biostimulation and bioaugmentation experiments aiming at chlorobenzene degradation in groundwater

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

Carbon catabolite repression in bacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

Regulation at complex bacterial promoters: how bacteria use different promoter organizations to produce different regulatory outcomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

Involvement of sigma 54 in exponential silencing of the Pseudomonas putida TOL plasmid Pu promoter.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

The black cat/white cat principle of signal integration in bacterial promoters

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

Genetic evidence that catabolites of the Entner-Doudoroff pathway signal C source repression of the sigma54 Pu promoter of Pseudomonas putida

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

The IIANtr (PtsN) protein of Pseudomonas putida mediates the C source inhibition of the sigma54-dependent Pu promoter of the TOL plasmid

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

Role of ptsO in carbon-mediated inhibition of the Pu promoter belonging to the pWW0 Pseudomonas putida plasmid

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

In vivo and in vitro effects of (p)ppGpp on the sigma(54) promoter Pu of the TOL plasmid of Pseudomonas putida.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

Regulation of sigma factor competition by the alarmone ppGpp

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

The role of the alarmone (p)ppGpp in sigma N competition for core RNA polymerase.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

Sigma 54 levels and physiological control of the Pseudomonas putida Pu promoter

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

In vivo UV laser footprinting of the Pseudomonas putidasigma 54Pu promoter reveals that integration host factor couples transcriptional activity to growth phase

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

Active recruitment of sigma54-RNA polymerase to the Pu promoter of Pseudomonas putida: role of IHF and alphaCTD.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

Recruitment of RNA polymerase is a rate-limiting step for the activation of the sigma(54) promoter Pu of Pseudomonas putida.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

Role of the crc gene in catabolic repression of the Pseudomonas putida GPo1 alkane degradation pathway.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

The Pseudomonas putida Crc global regulator controls the expression of genes from several chromosomal catabolic pathways for aromatic compounds

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

Inactivation of cytochrome o ubiquinol oxidase relieves catabolic repression of the Pseudomonas putida GPo1 alkane degradation pathway

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

Expression of the Pseudomonas putida OCT plasmid alkane degradation pathway is modulated by two different global control signals: evidence from continuous cultures

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

Characterization of two alkane hydroxylase genes from the marine hydrocarbonoclastic bacterium Alcanivorax borkumensis

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

Transcriptional control of the Pseudomonas TOL plasmid catabolic operons is achieved through an interplay of host factors and plasmid-encoded regulators

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

Multiple stress signal integration in the regulation of the complex sigma S-dependent csiD-ygaF-gabDTP operon in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

Deciphering environmental signal integration in sigma54-dependent promoters with a simple mathematical model

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

Divergence of mobile genetic elements involved in the distribution of xenobiotic-catabolic capacity.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

Damage-repair error-prone polymerases of eubacteria: association with mobile genome elements.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

Complete sequence of the IncP-9 TOL plasmid pWW0 from Pseudomonas putida

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

ampR gene mutations that greatly increase class C beta-lactamase activity in Enterobacter cloacae

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

-11 Mutation in the ampC promoter increasing resistance to beta-lactams in a clinical Escherichia coli strain

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

The evolution of a pleiotropic fitness tradeoff in Pseudomonas fluorescens.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

The large-scale organization of metabolic networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

RegulonDB (version 4.0): transcriptional regulation, operon organization and growth conditions in Escherichia coli K-12

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

From specific gene regulation to genomic networks: a global analysis of transcriptional regulation in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

Identifying global regulators in transcriptional regulatory networks in bacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

Bacterial regulation: global regulatory networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

The metabolic world of Escherichia coli is not small

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

The yeast coexpression network has a small-world, scale-free architecture and can be explained by a simple model

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

Network motifs: simple building blocks of complex networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

Network motifs in the transcriptional regulation network of Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

Aggregation of topological motifs in the Escherichia coli transcriptional regulatory network

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

Motifs, modules and games in bacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

Engineering stability in gene networks by autoregulation

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

Positive feedback in eukaryotic gene networks: cell differentiation by graded to binary response conversion

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

Development of genetic circuitry exhibiting toggle switch or oscillatory behavior in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

Structure and evolution of transcriptional regulatory networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

Gene regulatory network growth by duplication

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

Convergent evolution of gene circuits

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

Negative autoregulation speeds the response times of transcription networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

NCI: A server to identify non-canonical interactions in protein structures.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

Functional determinants of transcription factors in Escherichia coli: protein families and binding sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

From xenobiotic to antibiotic, formation of protoanemonin from 4-chlorocatechol by enzymes of the 3-oxoadipate pathway.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

Formation of protoanemonin from 2-chloro-cis,cis-muconate by the combined action of muconate cycloisomerase and muconolactone isomerase

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

The organization of the microbial biodegradation network from a systems-biology perspective

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

Evolution of enzymes for the metabolism of new chemical inputs into the environment

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

Mechanisms of solvent tolerance in gram-negative bacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

Quorum sensing as an integral component of gene regulatory networks in Gram-negative bacteria.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

Chemical communication in proteobacteria: biochemical and structural studies of signal synthases and receptors required for intercellular signalling

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

Characterization of a new solvent-responsive gene locus in Pseudomonas putida F1 and its functionalization as a versatile biosensor.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

Cross-regulation between a novel two-component signal transduction system for catabolism of toluene in Pseudomonas mendocina and the TodST system from Pseudomonas putida

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

Bacterial promoters triggering biodegradation of aromatic pollutants

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

Combinatorial synthesis of genetic networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

Complete genome sequence of Pseudomonas aeruginosa PAO1, an opportunistic pathogen

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

Pseudogenes, junk DNA, and the dynamics of Rickettsia genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

Evolution of protein superfamilies and bacterial genome size

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

Scaling laws in the functional content of genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

Trends between gene content and genome size in prokaryotic species with larger genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

Detection of multiple extracytoplasmic function (ECF) sigma factors in the genome of Pseudomonas putida KT2440 and their counterparts in Pseudomonas aeruginosa PA01.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

Bacterial signal transduction network in a genomic perspective

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

Quantification of dissimilatory (bi)sulphite reductase gene expression in Desulfobacterium autotrophicum using real-time RT-PCR.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

mRNA extraction and reverse transcription-PCR protocol for detection of nifH gene expression by Azotobacter vinelandii in soil

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

Quantification of gene expression in methanotrophs by competitive reverse transcription-polymerase chain reaction

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

Environmental genome shotgun sequencing of the Sargasso Sea

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

Estimating prokaryotic diversity and its limits

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

In vivo and in vitro effects of integration host factor at the DmpR-regulated sigma(54)-dependent Po promoter

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

Binding affinity of Escherichia coli RNA polymerase*sigma54 holoenzyme for the glnAp2, nifH and nifL promoters

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

Integrated regulation in response to aromatic compounds: from signal sensing to attractive behaviour

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

Mechanochemical ATPases and transcriptional activation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

Growth medium composition-determined regulatory mechanisms are superimposed on CatR-mediated transcription from the pheBA and catBCA promoters in Pseudomonas putida

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

Transcriptional regulation of styrene degradation in Pseudomonas putida CA-3.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

Novel domains of the prokaryotic two-component signal transduction systems

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

Evolution of cis-regulatory elements in duplicated genes of yeast

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

Transcription regulation and environmental adaptation in bacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

Involvement of the FtsH (HflB) protease in the activity of sigma54 promoters

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

Recruitment of σ54-RNA Polymerase to thePuPromoter ofPseudomonas putidathrough Integration Host Factor-mediated Positioning Switch of α Subunit Carboxyl-terminal Domain on an UP-like Element

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

Effector Specificity Mutants of the Transcriptional Activator NahR of Naphthalene DegradingPseudomonasDefine Protein Sites Involved in Binding of Aromatic Inducers

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

In Vitro Activities of an N-terminal Truncated Form of XylR, a σ54-dependent Transcriptional Activator of Pseudomonas putida

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

Bacteria designed for bioremediation

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

Growth-phase-dependent expression of the Pseudomonas putida TOL plasmid pWW0 catabolic genes

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

Carbon source-dependent inhibition of xyl operon expression of the Pseudomonas putida TOL plasmid

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

Transcriptional induction kinetics from the promoters of the catabolic pathways of TOL plasmid pWW0 of Pseudomonas putida for metabolism of aromatics

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

Bacterial transcriptional regulators for degradation pathways of aromatic compounds

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

Novel physiological modulation of the Pu promoter of TOL plasmid: negative regulatory role of the TurA protein of Pseudomonas putida in the response to suboptimal growth temperatures.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

Cloning and nucleotide sequence of the gene encoding the positive regulator (DmpR) of the phenol catabolic pathway encoded by pVI150 and identification of DmpR as a member of the NtrC family of transcriptional activators

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

Cross-regulation by XylR and DmpR activators of Pseudomonas putida suggests that transcriptional control of biodegradative operons evolves independently of catabolic genes

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

The alarmone (p)ppGpp mediates physiological-responsive control at the sigma 54-dependent Po promoter

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

m-xylene-responsive Pu-PnifH hybrid sigma54 promoters that overcome physiological control in Pseudomonas putida KT2442.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

The cyo operon of Pseudomonas putida is involved in carbon catabolite repression of phenol degradation

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

Generalized approach to the regulation and integration of gene expression

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

A tricarboxylic acid cycle intermediate regulating transcription of a chloroaromatic biodegradative pathway: fumarate-mediated repression of the clcABD operon

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

Genetic regulation of biological nitrogen fixation

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

Evolution of bacterial diversity and the origins of modularity.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

A new biology for a new century

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

Topological and causal structure of the yeast transcriptional regulatory network

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

Evolution of transcription factors and the gene regulatory network in Escherichia coli

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

Common History at the Origin of the Position-Function Correlation in Transcriptional Regulators in Archaea and Bacteria

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

Regulatory noise in prokaryotic promoters: how bacteria learn to respond to novel environmental signals

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

Transcriptional control of the Pseudomonas putida TOL plasmid catabolic pathways

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

Altered effector specificities in regulators of gene expression: TOL plasmid xylS mutants and their use to engineer expansion of the range of aromatics degraded by bacteria

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

Novel domains of the prokaryotic two-component signal transduction systems

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

A transcriptional activator, FleQ, regulates mucin adhesion and flagellar gene expression in Pseudomonas aeruginosa in a cascade manner

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

A positive feedback mechanism controls expression of AlkS, the transcriptional regulator of the Pseudomonas oleovorans alkane degradation pathway

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

Simultaneous monitoring of cell number and metabolic activity of specific bacterial populations with a dual gfp-luxAB marker system

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1084

inferred from DOI database lookup

7 January 2021

based on heuristic

Identifiers

DOI

10.1038/NRMICRO1084

1 reference

11 August 2017

1 reference