(Q36061856)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22379133%20AND%20SRC:MED&resulttype=core&format=json

24 January 2020

title

Tye7 regulates yeast Ty1 retrotransposon sense and antisense transcription in response to adenylic nucleotides stress (English)

1 reference

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24 January 2020

0 references

1

1 reference

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24 January 2020

Benoît Pinson

2

1 reference

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24 January 2020

Pascale Lesage

11

1 reference

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24 January 2020

author name string

Aurélie Tchalikian-Cosson

3

1 reference

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24 January 2020

Fanny Coulpier

4

1 reference

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24 January 2020

Sophie Lemoine

5

1 reference

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24 January 2020

Carole Pennetier

6

1 reference

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24 January 2020

Antoine Bridier-Nahmias

7

1 reference

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24 January 2020

Anne Laure Todeschini

8

1 reference

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24 January 2020

Hélène Fayol

9

1 reference

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24 January 2020

Bertrand Daignan-Fornier

10

1 reference

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24 January 2020

language of work or name

English

0 references

publication date

29 February 2012

1 reference

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24 January 2020

published in

Nucleic Acids Research

1 reference

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24 January 2020

volume

40

1 reference

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24 January 2020

issue

12

1 reference

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24 January 2020

page(s)

5271-5282

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22379133%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution-NonCommercial 3.0 Unported

24 January 2020

copyright license

start time

7 November 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

Metabolic status rather than cell cycle signals control quiescence entry and exit

1 reference

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2 October 2017

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Topoisomerase 1 provokes the formation of short deletions in repeated sequences upon high transcription in Saccharomyces cerevisiae

2 October 2017

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A brief history of the status of transposable elements: from junk DNA to major players in evolution

2 October 2017

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5' to 3' mRNA decay factors colocalize with Ty1 gag and human APOBEC3G and promote Ty1 retrotransposition

2 October 2017

1 reference

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P-body components are required for Ty1 retrotransposition during assembly of retrotransposition-competent virus-like particles

2 October 2017

1 reference

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Posttranslational interference of Ty1 retrotransposition by antisense RNAs

2 October 2017

1 reference

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Distinguishing direct versus indirect transcription factor-DNA interactions

2 October 2017

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Retroelements and their impact on genome evolution and functioning

2 October 2017

1 reference

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Phenotypic consequences of purine nucleotide imbalance in Saccharomyces cerevisiae

2 October 2017

1 reference

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Transposable elements: powerful facilitators of evolution

2 October 2017

1 reference

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H3 lysine 4 di- and tri-methylation deposited by cryptic transcription attenuates promoter activation

2 October 2017

1 reference

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Bidirectional promoters generate pervasive transcription in yeast

2 October 2017

1 reference

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High-resolution DNA-binding specificity analysis of yeast transcription factors

2 October 2017

1 reference

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A library of yeast transcription factor motifs reveals a widespread function for Rsc3 in targeting nucleosome exclusion at promoters

2 October 2017

1 reference

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Novel low abundance and transient RNAs in yeast revealed by tiling microarrays and ultra high-throughput sequencing are not conserved across closely related yeast species

2 October 2017

1 reference

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Co-regulation of yeast purine and phosphate pathways in response to adenylic nucleotide variations

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384299

A cryptic unstable transcript mediates transcriptional trans-silencing of the Ty1 retrotransposon in S. cerevisiae

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384299

Conserved themes in small-RNA-mediated transposon control

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384299

Antisense RNA stabilization induces transcriptional gene silencing via histone deacetylation in S. cerevisiae.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384299

SREBP controls oxygen-dependent mobilization of retrotransposons in fission yeast

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384299

Host factors that control long terminal repeat retrotransposons in Saccharomyces cerevisiae: implications for regulation of mammalian retroviruses

2 October 2017

1 reference

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A role for noncoding transcription in activation of the yeast PHO5 gene

2 October 2017

1 reference

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Multiple basic helix-loop-helix proteins regulate expression of the ENO1 gene of Saccharomyces cerevisiae

2 October 2017

1 reference

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Cytoplasmic decay of intergenic transcripts in Saccharomyces cerevisiae

2 October 2017

1 reference

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Goulphar: rapid access and expertise for standard two-color microarray normalization methods

2 October 2017

1 reference

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Regulation of an intergenic transcript controls adjacent gene transcription in Saccharomyces cerevisiae.

2 October 2017

1 reference

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Severe adenine starvation activates Ty1 transcription and retrotransposition in Saccharomyces cerevisiae.

2 October 2017

1 reference

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Stress activation and genomic impact of Tnt1 retrotransposons in Solanaceae

2 October 2017

1 reference

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Happy together: the life and times of Ty retrotransposons and their hosts

2 October 2017

1 reference

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Cryptic pol II transcripts are degraded by a nuclear quality control pathway involving a new poly(A) polymerase

2 October 2017

1 reference

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The significance of responses of the genome to challenge

2 October 2017

1 reference

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Transcriptional regulatory code of a eukaryotic genome

2 October 2017

1 reference

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Multicellular microorganisms: laboratory versus nature

2 October 2017

1 reference

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Post-transcriptional Cosuppression of Ty1 Retrotransposition

2 October 2017

1 reference

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Differential effects of chromatin and Gcn4 on the 50-fold range of expression among individual yeast Ty1 retrotransposons

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384299

Transcriptional cosuppression of yeast Ty1 retrotransposons

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384299

Activation of Ty transposition by mutagens

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384299

New components of a system for phosphate accumulation and polyphosphate metabolism in Saccharomyces cerevisiae revealed by genomic expression analysis

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384299

Activation of the Kss1 invasive-filamentous growth pathway induces Ty1 transcription and retrotransposition in Saccharomyces cerevisiae.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384299

The E-box DNA binding protein Sgc1p suppresses the gcr2 mutation, which is involved in transcriptional activation of glycolytic genes in Saccharomyces cerevisiae

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384299

Epitope tagging of yeast genes using a PCR-based strategy: more tags and improved practical routines

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384299

Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cerevisiae

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384299

Transposable elements and genome organization: a comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384299

A set of vectors with a tetracycline-regulatable promoter system for modulated gene expression in Saccharomyces cerevisiae

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384299

Evidence that complex formation by Bas1p and Bas2p (Pho2p) unmasks the activation function of Bas1p in an adenine-repressible step of ADE gene transcription

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384299

Yeast retrotransposon Ty4: the majority of the rare transcripts lack a U3-R sequence

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384299

Interspersion of an unusual GCN4 activation site with a complex transcriptional repression site in Ty2 elements of Saccharomyces cerevisiae

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384299

Three downstream sites repress transcription of a Ty2 retrotransposon in Saccharomyces cerevisiae

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384299

Involvement of SRE element of Ty1 transposon in TEC1-dependent transcriptional activation

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384299

The GCR1 requirement for yeast glycolytic gene expression is suppressed by dominant mutations in the SGC1 gene, which encodes a novel basic-helix-loop-helix protein

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384299

Ty3 transposes in mating populations of yeast: a novel transposition assay for Ty3

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384299

Diverse transposable elements are mobilized in hybrid dysgenesis in Drosophila virilis

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384299

Specific transcripts are elevated in Saccharomyces cerevisiae in response to DNA damage

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384299

The Saccharomyces cerevisiae genome contains functional and nonfunctional copies of transposon Ty1.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384299

Coregulation of purine and histidine biosynthesis by the transcriptional activators BAS1 and BAS2

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384299

Mutator transposon activation after UV-B involves chromatin remodeling

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384299

Mutations of RNA polymerase II activate key genes of the nucleoside triphosphate biosynthetic pathways

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384299

Remodeling yeast gene transcription by activating the Ty1 long terminal repeat retrotransposon under severe adenine deficiency

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384299

Positive and negative regulatory elements control expression of the yeast retrotransposon Ty3

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384299

Yeast retrotransposon revealed

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384299

XUTs are a class of Xrn1-sensitive antisense regulatory non-coding RNA in yeast.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384299

Multiple bHLH proteins regulate CIT2 expression in Saccharomyces cerevisiae

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384299

Metabolic intermediates selectively stimulate transcription factor interaction and modulate phosphate and purine pathways

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384299

A ncRNA modulates histone modification and mRNA induction in the yeast GAL gene cluster

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384299

Futile cycle of transcription initiation and termination modulates the response to nucleotide shortage in S. cerevisiae

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384299

Regulation of a eukaryotic gene by GTP-dependent start site selection and transcription attenuation.

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384299

The TYE7 gene of Saccharomyces cerevisiae encodes a putative bHLH-LZ transcription factor required for Ty1-mediated gene expression

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384299

Mitochondrial transcription is regulated via an ATP "sensing" mechanism that couples RNA abundance to respiration

23 September 2018

1 reference

12 December 2020

Revised procedures for yeast metabolites extraction: application to a glucose pulse to carbon-limited yeast cultures, which reveals a transient activation of the purine salvage pathway

1 reference

12 December 2020

Reactivation of a silenced minimal Mutator transposable element system following low-energy nitrogen ion implantation in maize

1 reference

12 December 2020

Domestication of wild Saccharomyces cerevisiae is accompanied by changes in gene expression and colony morphology

1 reference

12 December 2020

The SPT3 gene is required for normal transcription of Ty elements in S. cerevisiae

1 reference

12 December 2020

DNA damage activates transcription and transposition of yeast Ty retrotransposons

1 reference

12 December 2020

New vectors for combinatorial deletions in yeast chromosomes and for gap-repair cloning using 'split-marker' recombination

1 reference

12 December 2020

Impact of ionizing radiation on the life cycle of Saccharomyces cerevisiae Ty1 retrotransposon

1 reference

12 December 2020

The promoter of the TLC1.1 retrotransposon from Solanum chilense is activated by multiple stress-related signaling molecules

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/GKS166

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22379133%20AND%20SRC:MED&resulttype=core&format=json

24 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22379133%20AND%20SRC:MED&resulttype=core&format=json

24 January 2020

PubMed publication ID

22379133

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22379133%20AND%20SRC:MED&resulttype=core&format=json