(Q36070912)

12 August 2017

Complete genome sequence of Serratia plymuthica strain AS12. (English)

1 reference

12 August 2017

0 references

Serratia plymuthica

1 reference

based on heuristic

inferred from title

whole genome sequencing

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5

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12 August 2017

17

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20

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12 August 2017

7

Alla Lapidus

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Hans-Peter Klenk

22

Hans-Peter Klenk

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Roxanne Tapia

15

Roxanne Tapia

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Tanja Woyke

23

Tanja Woyke

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Cliff Han

Cliff Han

14

0 references

Roger Finlay

Roger D Finlay

2

0 references

Sam Pitluck

9

Sam Pitluck

1 reference

12 August 2017

19

Jan-Fang Cheng

1 reference

12 August 2017

4

Lynne Goodwin

1 reference

12 August 2017

18

Loren Hauser

1 reference

12 August 2017

6

Susan Lucas

1 reference

12 August 2017

16

John C Detter

1 reference

12 August 2017

12

Olga Chertkov

1 reference

12 August 2017

8

David Bruce

1 reference

12 August 2017

21

Ioanna Pagani

1 reference

12 August 2017

11

Galina Ovchinnikova

1 reference

12 August 2017

10

Lin Peters

1 reference

12 August 2017

1

Saraswoti Neupane

1 reference

12 August 2017

24

Nils Högberg

1 reference

12 August 2017

3

Sadhna Alström

1 reference

12 August 2017

James Han

13

1 reference

12 August 2017

1 May 2012

1 reference

Standards in genomic sciences

12 August 2017

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12 August 2017

6

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12 August 2017

2

1 reference

12 August 2017

165-173

1 reference

https://scigraph.springernature.com/pub.10.4056/sigs.2705996

12 August 2017

0 references

cites work

Complete genome sequence of the rapeseed plant-growth promoting Serratia plymuthica strain AS9

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3387793

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3387793

Digital DNA-DNA hybridization for microbial species delineation by means of genome-to-genome sequence comparison

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3387793

Prodigal: prokaryotic gene recognition and translation initiation site identification

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3387793

The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3387793

IMG ER: a system for microbial genome annotation expert review and curation

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3387793

The minimum information about a genome sequence (MIGS) specification

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3387793

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3387793

Clustal W and Clustal X version 2.0

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3387793

RNAmmer: consistent and rapid annotation of ribosomal RNA genes

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3387793

Genome sequencing in microfabricated high-density picolitre reactors

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3387793

The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3387793

Improved prediction of signal peptides: SignalP 3.0

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3387793

Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3387793

Gene ontology: tool for the unification of biology

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3387793

Consed: a graphical tool for sequence finishing

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3387793

Base-calling of automated sequencer traces using phred. II. Error probabilities

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3387793

Base-calling of automated sequencer traces using phred. I. Accuracy assessment

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3387793

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3387793

Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3387793

Standard operating procedure for calculating genome-to-genome distances based on high-scoring segment pairs

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3387793

Validation List no. 106: Validation of publication of new names and new combinations previously effectively published outside the IJSEM

11 July 2018

1 reference

https://api.crossref.org/works/10.4056%2FSIGS.2705996

Approved Lists of Bacterial Names

21 January 2018

1 reference

https://api.crossref.org/works/10.4056%2FSIGS.2705996

Conservation of the family name Enterobacteriaceae, of the name of the type genus, and designation of the type species OPINION NO. 15

21 January 2018

1 reference

https://api.crossref.org/works/10.4056%2FSIGS.2705996

21 January 2018

1 reference

https://api.crossref.org/works/10.4056%2FSIGS.2705996

GenePRIMP: a gene prediction improvement pipeline for prokaryotic genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.4056%2FSIGS.2705996

How many bootstrap replicates are necessary?

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3387793

Strains of the genus Serratia as beneficial rhizobacteria of oilseed rape with antifungal properties

23 September 2018

1 reference

https://api.crossref.org/works/10.4056%2FSIGS.2705996

Biological Control of Fungal Strawberry Diseases bySerratia plymuthicaHRO-C48

21 January 2018

1 reference

https://api.crossref.org/works/10.4056%2FSIGS.2705996

Impact of formulation procedures on the effect of the biocontrol agent Serratia plymuthica HRO-C48 on Verticillium wilt in oilseed rape

21 January 2018

1 reference

https://api.crossref.org/works/10.4056%2FSIGS.2705996

21 January 2018

Identifiers

DOI

10.4056/SIGS.2705996

1 reference

PMCID

3387793

Dimensions Publication ID

12 August 2017

0 references

1 reference

12 August 2017

1 reference

PMCID

3387793