(Q36085202)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27456340%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

title

The effect of DNA extraction methodology on gut microbiota research applications (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27456340%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27456340%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

Christopher Quince

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27456340%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

Emilie Combet

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27456340%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

Nicholas J. Loman

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27456340%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

Umer Zeeshan Ijaz

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27456340%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

Konstantinos Gerasimidis

1

object named as

Konstantinos Gerasimidis

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27456340%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

author name string

Katja Brunner

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27456340%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

Alanna Bruce

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27456340%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

Szymon Calus

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27456340%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

language of work or name

1 reference

26 July 2016

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27456340%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27456340%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

volume

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27456340%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

page(s)

365

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27456340%20AND%20SRC:MED&resulttype=core&format=json

describes a project that uses

19 March 2020

phyloseq

object named as

phyloseq

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

exact match

https://scigraph.springernature.com/pub.10.1186/s13104-016-2171-7

0 references

cites work

A comprehensive benchmarking study of protocols and sequencing platforms for 16S rRNA community profiling

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4960752

Extensive Modulation of the Fecal Metagenome in Children With Crohn's Disease During Exclusive Enteral Nutrition

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4960752

The impact of different DNA extraction kits and laboratories upon the assessment of human gut microbiota composition by 16S rRNA gene sequencing

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4960752

phyloseq: an R package for reproducible interactive analysis and graphics of microbiome census data

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4960752

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4960752

PANDAseq: paired-end assembler for illumina sequences

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4960752

Use of stable isotopes to measure the metabolic activity of the human intestinal microbiota

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4960752

phangorn: phylogenetic analysis in R

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4960752

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4960752

FastTree 2--approximately maximum-likelihood trees for large alignments

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4960752

Comparative analysis of fecal DNA extraction methods with phylogenetic microarray: effective recovery of bacterial and archaeal DNA using mechanical cell lysis

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4960752

Fecal collection, ambient preservation, and DNA extraction for PCR amplification of bacterial and human markers from human feces

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4960752

Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4960752

APE: Analyses of Phylogenetics and Evolution in R language

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4960752

Molecular microbial diversity of an anaerobic digestor as determined by small-subunit rDNA sequence analysis

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4960752

Decline in presumptively protective gut bacterial species and metabolites are paradoxically associated with disease improvement in pediatric Crohn's disease during enteral nutrition.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4960752

Improved detection of microbial DNA after bead-beating before DNA isolation.

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4960752

A new frontier in biodiversity inventory: a proposal for estimators of phylogenetic and functional diversity

23 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2FS13104-016-2171-7

A comparison of five methods for extraction of bacterial DNA from human faecal samples

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27456340

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/S13104-016-2171-7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27456340%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

19 March 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27456340%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

PubMed publication ID

27456340

1 reference