(Q36089115)

12 August 2017

The other side of the nearly neutral theory, evidence of slightly advantageous back-mutations (English)

1 reference

12 August 2017

2

1 reference

12 August 2017

Jane Charlesworth

1

1 reference

PMC publication ID

2040392

12 August 2017

language of work or name

English

0 references

publication date

16 October 2007

1 reference

Proceedings of the National Academy of Sciences of the United States of America

12 August 2017

1 reference

12 August 2017

104

1 reference

12 August 2017

43

1 reference

12 August 2017

16992-16997

1 reference

Widely distributed noncoding purifying selection in the human genome

12 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2040392

Prevalence of positive selection among nearly neutral amino acid replacements in Drosophila

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2040392

Inferring the distribution of mutational effects on fitness in Drosophila

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2040392

Evolution of amino-acid sequences and codon usage on the Drosophila miranda neo-sex chromosomes

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2040392

Population size does not influence mitochondrial genetic diversity in animals

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2040392

Model of effectively neutral mutations in which selective constraint is incorporated

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2040392

The distribution of fitness effects of new deleterious amino acid mutations in humans

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2040392

Estimating selection on nonsynonymous mutations

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2040392

Single origin of a pan-Pacific bird group and upstream colonization of Australasia

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2040392

Natural selection on protein-coding genes in the human genome

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2040392

Sex chromosome evolution: molecular aspects of Y-chromosome degeneration in Drosophila

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2040392

Initial sequence of the chimpanzee genome and comparison with the human genome

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2040392

Missense meanderings in sequence space: a biophysical view of protein evolution

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2040392

Cenozoic biogeography and evolution in direct-developing frogs of Central America (Leptodactylidae: Eleutherodactylus) as inferred from a phylogenetic analysis of nuclear and mitochondrial genes

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2040392

Evidence for widespread degradation of gene control regions in hominid genomes

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2040392

Evidence for abundant slightly deleterious polymorphisms in bacterial populations

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2040392

Bayesian analysis suggests that most amino acid replacements in Drosophila are driven by positive selection

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2040392

Estimating the distribution of fitness effects from DNA sequence data: implications for the molecular clock

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2040392

Estimating the distribution of selection coefficients from phylogenetic data with applications to mitochondrial and viral DNA.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2040392

Evolution of synonymous codon usage in metazoans

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2040392

Testing the neutral theory of molecular evolution with genomic data from Drosophila.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2040392

Adaptive protein evolution in Drosophila

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2040392

Chameleon radiation by oceanic dispersal

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2040392

Does nonneutral evolution shape observed patterns of DNA variation in animal mitochondrial genomes?

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2040392

RNA secondary structure and compensatory evolution

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2040392

Molecular phylogeny of Coriaria, with special emphasis on the disjunct distribution

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2040392

Local recombination and mutation effects on molecular evolution in Drosophila

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2040392

Characterization of single-nucleotide polymorphisms in coding regions of human genes

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2040392

Inferring the fitness effects of DNA mutations from polymorphism and divergence data: statistical power to detect directional selection under stationarity and free recombination.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2040392

Mutation and selection at silent and replacement sites in the evolution of animal mitochondrial DNA.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2040392

PAML: a program package for phylogenetic analysis by maximum likelihood

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2040392

Amino acid substitution at the Adh locus of Drosophila is facilitated by small population size

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2040392

Substitution processes in molecular evolution. III. Deleterious alleles.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2040392

An evaluation of the molecular clock hypothesis using mammalian DNA sequences

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2040392

Theoretical study of near neutrality. I. Heterozygosity and rate of mutant substitution

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2040392

A study on a nearly neutral mutation model in finite populations

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2040392

Adaptive protein evolution at the Adh locus in Drosophila

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2040392

The selection-mutation-drift theory of synonymous codon usage

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2040392

Population genetics of polymorphism and divergence

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2040392

Models of nearly neutral mutations with particular implications for nonrandom usage of synonymous codons.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2040392

The rate of adaptive evolution in enteric bacteria.

11 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0705456104

Adaptive evolution of non-coding DNA in Drosophila

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0705456104

Sociality and the rate of molecular evolution.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0705456104

Elevated rates of nonsynonymous substitution in island birds.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0705456104

Molecular evolution and phylogeny of the human AIDS viruses LAV, HTLV-III, and ARV.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0705456104

Increased rates of sequence evolution in endosymbiotic bacteria and fungi with small effective population sizes

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0705456104

Evolutionary constraints in conserved nongenic sequences of mammals.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0705456104

Fast accumulation of nonsynonymous mutations on the female-specific W chromosome in birds.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0705456104

The cost of inbreeding in Arabidopsis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0705456104

The Nearly Neutral Theory of Molecular Evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0705456104

Comment on "Population size does not influence mitochondrial genetic diversity in animals".

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0705456104

Human SNPs reveal no evidence of frequent positive selection

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0705456104

The genomic rate of adaptive amino acid substitution in Drosophila.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0705456104

Adaptation in the env gene of HIV-1 and evolutionary theories of disease progression

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0705456104

Conserved noncoding sequences are selectively constrained and not mutation cold spots

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0705456104

Population size and molecular evolution on islands

21 January 2018

1 reference

12 December 2020

Robust signals of coevolution of interacting residues in mammalian proteomes identified by phylogeny-aided structural analysis

1 reference

12 December 2020

THE MOLECULAR CLOCK AND THE RELATIONSHIP BETWEEN POPULATION SIZE AND GENERATION TIME.

1 reference

12 December 2020

Synonymous and nonsynonymous substitutions in mammalian genes and the nearly neutral theory

1 reference

12 December 2020

Deleterious mutations in animal mitochondrial DNA

1 reference

12 December 2020

Identifiers

DOI

10.1073/PNAS.0705456104

1 reference

12 August 2017

0 references

1 reference

PMC publication ID

2040392

12 August 2017

PubMed publication ID

17940029

1 reference

PMC publication ID

2040392