(Q36092232)

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Deep sequencing and de novo assembly of the mouse oocyte transcriptome define the contribution of transcription to the DNA methylation landscape

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scholarly article

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Europe PubMed Central

PMC publication ID

12 August 2017

Deep sequencing and de novo assembly of the mouse oocyte transcriptome define the contribution of transcription to the DNA methylation landscape (English)

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Europe PubMed Central

PMC publication ID

12 August 2017

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DNA methylation

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corrigendum / erratum

Erratum to: Deep sequencing and de novo assembly of the mouse occyte transcriptome define the contribution of transcription to the DNA methylation landscape

1 reference

10.1186/S13059-015-0809-8

12 July 2019

http://api.crossref.org/works?select=update-to&filter=doi:10.1186/S13059-015-0809-8

1

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Europe PubMed Central

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3 June 2020

Kathleen R Stewart-Morgan

4

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Europe PubMed Central

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3 June 2020

5

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Europe PubMed Central

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3 June 2020

Philippe Arnaud

7

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3 June 2020

Shin-Ichi Tomizawa

8

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3 June 2020

10

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3 June 2020

author name string

Sebastien A Smallwood

2

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3 June 2020

Heba Saadeh

3

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3 June 2020

Stéphanie Maupetit-Méhouas

6

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Europe PubMed Central

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3 June 2020

Simon Andrews

9

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3 June 2020

publication date

25 September 2015

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Europe PubMed Central

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12 August 2017

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Europe PubMed Central

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3 June 2020

16

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Europe PubMed Central

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3 June 2020

209

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3 June 2020

copyright license

Creative Commons Attribution 4.0 International

25 September 2015

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April 2022 Public Data File from Crossref

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0 references

Genomic profiling of DNA methyltransferases reveals a role for DNMT3B in genic methylation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4582738

2 October 2017

Ontogeny of CpG island methylation and specificity of DNMT3 methyltransferases during embryonic development in the mouse

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4582738

2 October 2017

Gene body methylation can alter gene expression and is a therapeutic target in cancer.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4582738

2 October 2017

Programming and inheritance of parental DNA methylomes in mammals

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4582738

2 October 2017

DNA methylation dynamics during epigenetic reprogramming in the germline and preimplantation embryos.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4582738

2 October 2017

Inferring the choreography of parental genomes during fertilization from ultralarge-scale whole-transcriptome analysis

1 reference

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2 October 2017

NONCODEv4: exploring the world of long non-coding RNA genes

1 reference

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2 October 2017

A retrotransposon-driven dicer isoform directs endogenous small interfering RNA production in mouse oocytes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4582738

2 October 2017

Genetic programs in human and mouse early embryos revealed by single-cell RNA sequencing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4582738

2 October 2017

Utilizing sequence intrinsic composition to classify protein-coding and long non-coding transcripts

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4582738

2 October 2017

Mouse oocyte methylomes at base resolution reveal genome-wide accumulation of non-CpG methylation and role of DNA methyltransferases.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4582738

2 October 2017

Reprogramming DNA methylation in the mammalian life cycle: building and breaking epigenetic barriers

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4582738

2 October 2017

Evaluation of different reference based annotation strategies using RNA-Seq - a case study in Drososphila pseudoobscura

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4582738

2 October 2017

Epigenetic interplay between mouse endogenous retroviruses and host genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4582738

2 October 2017

The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4582738

2 October 2017

Protection against de novo methylation is instrumental in maintaining parent-of-origin methylation inherited from the gametes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4582738

2 October 2017

Cfp1 integrates both CpG content and gene activity for accurate H3K4me3 deposition in embryonic stem cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4582738

2 October 2017

Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells

1 reference

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2 October 2017

Embryonic stem cell potency fluctuates with endogenous retrovirus activity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4582738

2 October 2017

A unique regulatory phase of DNA methylation in the early mammalian embryo

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4582738

2 October 2017

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4582738

2 October 2017

Contribution of intragenic DNA methylation in mouse gametic DNA methylomes to establish oocyte-specific heritable marks

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4582738

2 October 2017

Transcription is required to establish maternal imprinting at the Prader-Willi syndrome and Angelman syndrome locus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4582738

2 October 2017

De novo DNA methylation: a germ cell perspective.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4582738

2 October 2017

Deterministic and stochastic allele specific gene expression in single mouse blastomeres

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4582738

2 October 2017

Dynamic CpG island methylation landscape in oocytes and preimplantation embryos

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4582738

2 October 2017

Dynamic stage-specific changes in imprinted differentially methylated regions during early mammalian development and prevalence of non-CpG methylation in oocytes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4582738

2 October 2017

Hormad1 mutation disrupts synaptonemal complex formation, recombination, and chromosome segregation in mammalian meiosis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4582738

2 October 2017

Orphan CpG islands identify numerous conserved promoters in the mammalian genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4582738

2 October 2017

Human LSD2/KDM1b/AOF1 regulates gene transcription by modulating intragenic H3K4me2 methylation.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4582738

2 October 2017

The Dnmt3a PWWP domain reads histone 3 lysine 36 trimethylation and guides DNA methylation

1 reference

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2 October 2017

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

1 reference

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2 October 2017

Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs

1 reference

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Targeted deletion of the Nesp55 DMR defines another Gnas imprinting control region and provides a mouse model of autosomal dominant PHP-Ib

1 reference

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KDM1B is a histone H3K4 demethylase required to establish maternal genomic imprints

1 reference

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1 reference

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Transcription is required for establishment of germline methylation marks at imprinted genes

1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

https://pubmed.ncbi.nlm.nih.gov/26408185

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

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10.1186/S13059-015-0769-Z

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Europe PubMed Central

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3 June 2020

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Europe PubMed Central

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3 June 2020

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26408185%20AND%20SRC:MED&resulttype=core&format=json

3 June 2020

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