(Q37197850)

18 August 2017

Utilizing sequence intrinsic composition to classify protein-coding and long non-coding transcripts (English)

1 reference

18 August 2017

Runsheng Chen

8

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author name string

Liang Sun

1

1 reference

18 August 2017

Haitao Luo

2

1 reference

18 August 2017

Dechao Bu

3

1 reference

18 August 2017

Guoguang Zhao

4

1 reference

18 August 2017

Kuntao Yu

5

1 reference

18 August 2017

Changhai Zhang

6

1 reference

18 August 2017

Yuanning Liu

7

1 reference

18 August 2017

Yi Zhao

9

1 reference

18 August 2017

language of work or name

English

0 references

publication date

27 July 2013

1 reference

18 August 2017

Nucleic Acids Research

1 reference

18 August 2017

41

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18 August 2017

17

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18 August 2017

e166

1 reference

Creative Commons Attribution 3.0 Unported

18 August 2017

start time

8 November 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

Long non-coding RNAs function annotation: a global prediction method based on bi-colored networks

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3783192

The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3783192

Landscape of transcription in human cells

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3783192

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3783192

Modular regulatory principles of large non-coding RNAs

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3783192

NONCODE v3.0: integrative annotation of long noncoding RNAs

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3783192

Ensembl Genomes: an integrative resource for genome-scale data from non-vertebrate species.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3783192

The evolution of gene expression levels in mammalian organs

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3783192

Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3783192

ncFANs: a web server for functional annotation of long non-coding RNAs

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3783192

PhyloCSF: a comparative genomics method to distinguish protein coding and non-coding regions

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3783192

BlastR--fast and accurate database searches for non-coding RNAs

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3783192

Large-scale prediction of long non-coding RNA functions in a coding-non-coding gene co-expression network

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3783192

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3783192

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3783192

Accurate discrimination of conserved coding and non-coding regions through multiple indicators of evolutionary dynamics

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3783192

MM-align: a quick algorithm for aligning multiple-chain protein complex structures using iterative dynamic programming

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3783192

TopHat: discovering splice junctions with RNA-Seq

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3783192

Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3783192

Differentiating protein-coding and noncoding RNA: challenges and ambiguities

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3783192

CPC: assess the protein-coding potential of transcripts using sequence features and support vector machine.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3783192

tRNA properties help shape codon pair preferences in open reading frames

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3783192

Prediction of complete gene structures in human genomic DNA

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3783192

CPAT: Coding-Potential Assessment Tool using an alignment-free logistic regression model

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3783192

An integrated encyclopedia of DNA elements in the human genome

14 September 2017

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FNAR%2FGKT646

21 January 2018

Identifiers

DOI

10.1093/NAR/GKT646

1 reference

18 August 2017

1 reference

18 August 2017

1 reference