(Q36106954)

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Real-time single-molecule tethered particle motion experiments reveal the kinetics and mechanisms of Cre-mediated site-specific recombination

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scholarly article

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Europe PubMed Central

PMC publication ID

12 August 2017

Real-time single-molecule tethered particle motion experiments reveal the kinetics and mechanisms of Cre-mediated site-specific recombination (English)

1 reference

Europe PubMed Central

PMC publication ID

12 August 2017

author name string

Hsiu-Fang Fan

1

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Europe PubMed Central

PMC publication ID

12 August 2017

language of work or name

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publication date

29 March 2012

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Europe PubMed Central

PMC publication ID

12 August 2017

Nucleic Acids Research

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Europe PubMed Central

PMC publication ID

12 August 2017

40

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Europe PubMed Central

PMC publication ID

12 August 2017

13

1 reference

Europe PubMed Central

PMC publication ID

12 August 2017

6208-6222

1 reference

Europe PubMed Central

PMC publication ID

12 August 2017

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Creative Commons Attribution-NonCommercial 3.0 Unported

4 October 2016

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April 2022 Public Data File from Crossref

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Developing single-molecule TPM experiments for direct observation of successful RecA-mediated strand exchange reaction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3401459

2 October 2017

Single-molecule analysis reveals the molecular bearing mechanism of DNA strand exchange by a serine recombinase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3401459

2 October 2017

Quantitative analysis of DNA-looping kinetics from tethered particle motion experiments.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3401459

2 October 2017

Requirements for catalysis in the Cre recombinase active site

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3401459

2 October 2017

SSB protein diffusion on single-stranded DNA stimulates RecA filament formation.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3401459

2 October 2017

An SOS inhibitor that binds to free RecA protein: the PsiB protein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3401459

2 October 2017

Studying RecBCD helicase translocation along Chi-DNA using tethered particle motion with a stretching force.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3401459

2 October 2017

Synapsis of loxP sites by Cre recombinase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3401459

2 October 2017

Viewing single lambda site-specific recombination events from start to finish

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3401459

2 October 2017

Lac repressor hinge flexibility and DNA looping: single molecule kinetics by tethered particle motion

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3401459

2 October 2017

Crystal structure of a wild-type Cre recombinase-loxP synapse reveals a novel spacer conformation suggesting an alternative mechanism for DNA cleavage activation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3401459

2 October 2017

Mutations at residues 282, 286, and 293 of phage lambda integrase exert pathway-specific effects on synapsis and catalysis in recombination.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3401459

2 October 2017

Cre-loxP biochemistry

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3401459

2 October 2017

Genome engineering using site-specific recombinases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3401459

2 October 2017

Conditional gene knockout using cre recombinase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3401459

2 October 2017

Asymmetric DNA bending in the Cre-loxP site-specific recombination synapse

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3401459

2 October 2017

The geometry of a synaptic intermediate in a pathway of bacteriophage lambda site-specific recombination

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3401459

2 October 2017

DNA bending by small, mobile multivalent cations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3401459

2 October 2017

Structure of Cre recombinase complexed with DNA in a site-specific recombination synapse

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3401459

2 October 2017

The integrase family of tyrosine recombinases: evolution of a conserved active site domain

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3401459

2 October 2017

Synaptic intermediates in bacteriophage lambda site-specific recombination: integrase can align pairs of attachment sites.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3401459

2 October 2017

Site-specific recombination and circular chromosome segregation.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3401459

2 October 2017

Tethered particle motion method for studying transcript elongation by a single RNA polymerase molecule

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3401459

2 October 2017

Inducible gene targeting in mice

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3401459

2 October 2017

Bacteriophage P1 site-specific recombination. Purification and properties of the Cre recombinase protein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3401459

2 October 2017

Site-specific DNA condensation and pairing mediated by the int protein of bacteriophage lambda

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3401459

2 October 2017

Interaction of the bacteriophage P1 recombinase Cre with the recombining site loxP

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3401459

2 October 2017

Kinetics of protein-nucleic acid interactions: use of salt effects to probe mechanisms of interaction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3401459

2 October 2017

FLP recombinase is an enzyme

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3401459

2 October 2017

Stoichiometry of the Cre recombinase bound to the lox recombining site

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3401459

2 October 2017

Catalysis by site-specific recombinases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3401459

2 October 2017

Comparative kinetic analysis of FLP and cre recombinases: mathematical models for DNA binding and recombination.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3401459

2 July 2018

Diffusion-driven mechanisms of protein translocation on nucleic acids. 3. The Escherichia coli lac repressor--operator interaction: kinetic measurements and conclusions.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3401459

2 July 2018

Isolation of intermediates in the binding of the FLP recombinase of the yeast plasmid 2-micron circle to its target sequence

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3401459

2 July 2018

Homology-dependent interactions in phage lambda site-specific recombination

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3401459

2 July 2018

Cre-lox recombination in Escherichia coli cells. Mechanistic differences from the in vitro reaction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3401459

2 July 2018

Probing DNA conformational changes with high temporal resolution by tethered particle motion.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3401459

23 September 2018

Tethered particle motion as a diagnostic of DNA tether length.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3401459

23 September 2018

DNA topology and geometry in Flp and Cre recombination.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3401459

23 September 2018

Analysis of Cre-loxP interaction by surface plasmon resonance: influence of spermidine on cooperativity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3401459

23 September 2018

Specific DNA recognition by EcoRV restriction endonuclease induced by calcium ions.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3401459

23 September 2018

Site-specific recombination by the bacteriophage P1 lox-Cre system. Cre-mediated synapsis of two lox sites

1 reference

https://pubmed.ncbi.nlm.nih.gov/22467208

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Copy number amplification of the 2 micron circle plasmid of Saccharomyces cerevisiae

1 reference

https://pubmed.ncbi.nlm.nih.gov/22467208

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A protein dissociation step limits turnover in FLP recombinase-mediated site-specific recombination

1 reference

https://pubmed.ncbi.nlm.nih.gov/22467208

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Architectural flexibility in lambda site-specific recombination: three alternate conformations channel the attL site into three distinct pathways

1 reference

https://pubmed.ncbi.nlm.nih.gov/22467208

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

FLP site-specific recombinase of yeast 2-micron plasmid. Topological features of the reaction

1 reference

https://pubmed.ncbi.nlm.nih.gov/22467208

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1093/NAR/GKS274

1 reference

Europe PubMed Central

PMC publication ID

12 August 2017

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

12 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

12 August 2017

ResearchGate publication ID

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