(Q36120328)

12 August 2017

Breeding signatures of rice improvement revealed by a genomic variation map from a large germplasm collection (English)

1 reference

12 August 2017

Meng Yang

7

0 references

Wen Yao

Wen Yao

4

0 references

Meng Yuan

Meng Yuan

3

0 references

XingMing Lian

Xingming Lian

26

0 references

Weibo Xie

Weibo Xie

1

0 references

Lizhong Xiong

Lizhong Xiong

18

0 references

Caiguo Xu

22

Caiguo Xu

1 reference

12 August 2017

27

Qifa Zhang

1 reference

12 August 2017

Gongwei Wang

2

1 reference

12 August 2017

Kai Lyu

5

1 reference

12 August 2017

Hu Zhao

6

1 reference

12 August 2017

Pingbo Li

8

1 reference

12 August 2017

Xing Zhang

9

1 reference

12 August 2017

Jing Yuan

10

1 reference

12 August 2017

Quanxiu Wang

11

1 reference

12 August 2017

Fang Liu

12

1 reference

12 August 2017

Huaxia Dong

13

1 reference

12 August 2017

Lejing Zhang

14

1 reference

12 August 2017

Xinglei Li

15

1 reference

12 August 2017

Xiangzhou Meng

16

1 reference

12 August 2017

Wan Zhang

17

1 reference

12 August 2017

Yuqing He

19

1 reference

12 August 2017

Shiping Wang

20

1 reference

12 August 2017

Sibin Yu

21

1 reference

12 August 2017

Jie Luo

23

1 reference

12 August 2017

Xianghua Li

24

1 reference

12 August 2017

Jinghua Xiao

25

1 reference

12 August 2017

language of work or name

English

0 references

publication date

10 September 2015

1 reference

Proceedings of the National Academy of Sciences of the United States of America

12 August 2017

1 reference

12 August 2017

112

1 reference

12 August 2017

39

1 reference

12 August 2017

E5411-9

1 reference

Combining high-throughput phenotyping and genome-wide association studies to reveal natural genetic variation in rice

12 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4593105

RiceVarMap: a comprehensive database of rice genomic variations

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4593105

Predicting hybrid performance in rice using genomic best linear unbiased prediction

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4593105

Genome-wide comparative diversity uncovers multiple targets of selection for improvement in hexaploid wheat landraces and cultivars

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4593105

A map of rice genome variation reveals the origin of cultivated rice

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4593105

Genetic composition of yield heterosis in an elite rice hybrid

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4593105

Historical genomics of North American maize.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4593105

Comparative population genomics of maize domestication and improvement

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4593105

A new approach to bias correction in RNA-Seq

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4593105

Plant nitrogen assimilation and use efficiency

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4593105

Evaluating the effective numbers of independent tests and significant p-value thresholds in commercial genotyping arrays and public imputation reference datasets

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4593105

Ortholog alleles at Xa3/Xa26 locus confer conserved race-specific resistance against Xanthomonas oryzae in rice

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4593105

Artificial selection for a green revolution gene during japonica rice domestication

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4593105

Genomic inflation factors under polygenic inheritance

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4593105

Gains in QTL detection using an ultra-high density SNP map based on population sequencing relative to traditional RFLP/SSR markers

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4593105

Parent-independent genotyping for constructing an ultrahigh-density linkage map based on population sequencing.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4593105

Population differentiation as a test for selective sweeps

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4593105

Fast model-based estimation of ancestry in unrelated individuals

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4593105

Genomewide SNP variation reveals relationships among landraces and modern varieties of rice

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4593105

Pentatricopeptide repeat proteins: a socket set for organelle gene expression.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4593105

A new approach for using genome scans to detect recent positive selection in the human genome

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4593105

The map-based sequence of the rice genome

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4593105

Cytokinin oxidase regulates rice grain production

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4593105

APE: Analyses of Phylogenetics and Evolution in R language

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4593105

Single-locus heterotic effects and dominance by dominance interactions can adequately explain the genetic basis of heterosis in an elite rice hybrid

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4593105

Semidwarf (sd-1), "green revolution" rice, contains a defective gibberellin 20-oxidase gene

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4593105

Importance of epistasis as the genetic basis of heterosis in an elite rice hybrid

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4593105

Loss of function of a rice brassinosteroid insensitive1 homolog prevents internode elongation and bending of the lamina joint

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4593105

The rice pentatricopeptide repeat protein RF5 restores fertility in Hong-Lian cytoplasmic male-sterile lines via a complex with the glycine-rich protein GRP162.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4593105

A high-density SNP genotyping array for rice biology and molecular breeding.

2 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4593105

A whole-genome SNP array (RICE6K) for genomic breeding in rice

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4593105

Genome-wide association study of flowering time and grain yield traits in a worldwide collection of rice germplasm.

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4593105

FaST linear mixed models for genome-wide association studies

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4593105

Mutations in the F-box gene LARGER PANICLE improve the panicle architecture and enhance the grain yield in rice.

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4593105

Genome-wide association studies of 14 agronomic traits in rice landraces.

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4593105

A core collection and mini core collection of Oryza sativa L. in China.

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4593105

Xa26, a gene conferring resistance to Xanthomonas oryzae pv. oryzae in rice, encodes an LRR receptor kinase-like protein.

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4593105

Molecular diversity and multilocus organization of the parental lines used in the International Rice Molecular Breeding Program.

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4593105

Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism

23 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26358652

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Characterization of the main effects, epistatic effects and their environmental interactions of QTLs on the genetic basis of yield traits in rice

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26358652

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

A diallel analysis of heterosis in elite hybrid rice based on RFLPs and microsatellites

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26358652

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.1515919112

1 reference

12 August 2017

0 references

1 reference

12 August 2017

PubMed publication ID

26358652

1 reference