(Q36128123)

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Meta-Analysis of Parkinson's Disease Transcriptome Data Using TRAM Software: Whole Substantia Nigra Tissue and Single Dopamine Neuron Differential Gene Expression.

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scholarly article

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Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27611585%20AND%20SRC:MED&resulttype=core&format=json

22 March 2020

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Meta-Analysis of Parkinson's Disease Transcriptome Data Using TRAM Software: Whole Substantia Nigra Tissue and Single Dopamine Neuron Differential Gene Expression (English)

1 reference

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27611585%20AND%20SRC:MED&resulttype=core&format=json

22 March 2020

substantia nigra

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inferred from title

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Parkinson's disease

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based on heuristic

inferred from title

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inferred from title

Fabrizio Pizzetti

5

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22 March 2020

Raffaella Casadei

6

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22 March 2020

author name string

Elisa Mariani

1

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22 March 2020

Flavia Frabetti

2

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22 March 2020

Andrea Tarozzi

3

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22 March 2020

Maria Chiara Pelleri

4

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22 March 2020

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9 September 2016

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22 March 2020

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22 March 2020

11

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22 March 2020

9

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22 March 2020

e0161567

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22 March 2020

copyright license

Creative Commons Attribution 4.0 International

9 September 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

0 references

Adaptive preconditioning in neurological diseases – therapeutic insights from proteostatic perturbations

1 reference

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2 October 2017

Review: Parkinson's disease: from synaptic loss to connectome dysfunction.

1 reference

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2 October 2017

Gene Expression in HIV-Associated Neurocognitive Disorders: A Meta-Analysis.

1 reference

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2 October 2017

Regulation of cytoskeletal dynamics by redox signaling and oxidative stress: implications for neuronal development and trafficking

1 reference

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2 October 2017

TIGIT predominantly regulates the immune response via regulatory T cells.

1 reference

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2 October 2017

Role of microRNAs in the regulation of innate immune cells under neuroinflammatory conditions.

1 reference

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2 October 2017

Disease-modifying strategies for Parkinson's disease

1 reference

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2 October 2017

A quantitative transcriptome reference map of the normal human hippocampus

1 reference

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Trefoil factor family peptides TFF1 and TFF3 in the nervous tissues of developing mouse embryo

1 reference

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2 October 2017

Loss of angiotensin II receptor expression in dopamine neurons in Parkinson's disease correlates with pathological progression and is accompanied by increases in Nox4- and 8-OH guanosine-related nucleic acid oxidation and caspase-3 activation

1 reference

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2 October 2017

Integrated differential transcriptome maps of Acute Megakaryoblastic Leukemia (AMKL) in children with or without Down Syndrome (DS)

1 reference

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2 October 2017

Peripheral α-defensins 1 and 2 are elevated in Alzheimer's disease

1 reference

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2 October 2017

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2 October 2017

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1 reference

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2 October 2017

MiR-622 suppresses proliferation, invasion and migration by directly targeting activating transcription factor 2 in glioma cells

1 reference

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2 October 2017

Relevance of α-defensins (HNP1-3) and defensin β-1 in diabetes

1 reference

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2 October 2017

Long non-coding RNA and alternative splicing modulations in Parkinson's leukocytes identified by RNA sequencing

1 reference

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2 October 2017

Expression Atlas update--a database of gene and transcript expression from microarray- and sequencing-based functional genomics experiments

1 reference

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2 October 2017

Genetic basis of Parkinson's disease: inheritance, penetrance, and expression

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5017670

2 October 2017

Neuroimmune regulation of homeostatic synaptic plasticity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5017670

2 October 2017

NCBI GEO: archive for functional genomics data sets--update

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5017670

2 October 2017

A genetic basis for the variable effect of smoking/nicotine on Parkinson's disease.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5017670

2 October 2017

The potential of GPNMB as novel neuroprotective factor in amyotrophic lateral sclerosis

1 reference

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2 October 2017

Emerging roles of non-coding RNAs in brain evolution, development, plasticity and disease

1 reference

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2 October 2017

Modular regulatory principles of large non-coding RNAs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5017670

2 October 2017

Levetiracetam reverses synaptic deficits produced by overexpression of SV2A

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5017670

2 October 2017

Gene expression profiling of embryonic human neural stem cells and dopaminergic neurons from adult human substantia nigra

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5017670

2 October 2017

A two-stage meta-analysis identifies several new loci for Parkinson's disease

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5017670

2 October 2017

Expression analysis of dopaminergic neurons in Parkinson's disease and aging links transcriptional dysregulation of energy metabolism to cell death.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5017670

2 October 2017

Down-regulation of miR-622 in gastric cancer promotes cellular invasion and tumor metastasis by targeting ING1 gene

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5017670

2 October 2017

TRAM (Transcriptome Mapper): database-driven creation and analysis of transcriptome maps from multiple sources

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5017670

2 October 2017

PGC-1α, a potential therapeutic target for early intervention in Parkinson's disease

1 reference

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2 October 2017

Epigenetics in neurodegeneration: a new layer of complexity.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5017670

2 October 2017

Molecular pathogenesis of Parkinson disease: insights from genetic studies

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5017670

2 October 2017

A cross-study transcriptional analysis of Parkinson's disease

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5017670

2 October 2017

Parkinson's disease: from monogenic forms to genetic susceptibility factors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5017670

2 October 2017

Gene expression profiling of substantia nigra dopamine neurons: further insights into Parkinson's disease pathology

1 reference

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2 October 2017

Incidental Lewy body disease and preclinical Parkinson disease

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5017670

2 October 2017

A MicroRNA feedback circuit in midbrain dopamine neurons

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5017670

2 October 2017

A genomic pathway approach to a complex disease: axon guidance and Parkinson disease

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5017670

2 October 2017

Exon arrays provide accurate assessments of gene expression

1 reference

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2 October 2017

Effects of gender on nigral gene expression and parkinson disease

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5017670

2 October 2017

The diverse functions of microRNAs in animal development and disease

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5017670

2 October 2017

The degeneration of dopamine neurons in Parkinson's disease: insights from embryology and evolution of the mesostriatocortical system

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5017670

2 October 2017

Histological changes of the dopaminergic nigrostriatal system in aging

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5017670

2 October 2017

MicroRNAs: genomics, biogenesis, mechanism, and function

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5017670

2 October 2017

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0161567

21 January 2018

Cell type specific expression of secretory TFF peptides: colocalization with mucins and synthesis in the brain

1 reference

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2 October 2017

Gene ontology: tool for the unification of biology

1 reference

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2 October 2017

pS2/TFF1 interacts directly with the VWFC cysteine-rich domains of mucins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5017670

2 October 2017

Expression monitoring by hybridization to high-density oligonucleotide arrays

1 reference

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2 October 2017

Expression and immunolocalization of Gpnmb, a glioma-associated glycoprotein, in normal and inflamed central nervous systems of adult rats

1 reference

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2 July 2018

RNA-Seq: a method for comprehensive transcriptome analysis

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2 July 2018

Neuronal pentraxin II is highly upregulated in Parkinson's disease and a novel component of Lewy bodies

1 reference

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2 July 2018

Whole genome expression profiling of the medial and lateral substantia nigra in Parkinson's disease.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5017670

2 July 2018

A quantitative transcriptome reference map of the normal human brain

1 reference

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1 reference

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23 September 2018

Genetics and epigenetics of Parkinson's disease.

1 reference

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23 September 2018

Transcriptome analysis reveals link between proteasomal and mitochondrial pathways in Parkinson's disease.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5017670

23 September 2018

Transcriptional analysis of multiple brain regions in Parkinson's disease supports the involvement of specific protein processing, energy metabolism, and signaling pathways, and suggests novel disease mechanisms.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5017670

23 September 2018

SV2C is a synaptic vesicle protein with an unusually restricted localization: anatomy of a synaptic vesicle protein family.

1 reference

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23 September 2018

Prognosis of Parkinson Disease

1 reference

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21 January 2018

Chromosome 5 and Parkinson disease

1 reference

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21 January 2018

Linkage analysis of juvenile parkinsonism to tyrosine hydroxylase gene locus on chromosome 11

1 reference

https://pubmed.ncbi.nlm.nih.gov/27611585

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The genetics of Parkinson's disease

1 reference

https://pubmed.ncbi.nlm.nih.gov/27611585

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Gene expression profiling of parkinsonian substantia nigra pars compacta; alterations in ubiquitin-proteasome, heat shock protein, iron and oxidative stress regulated proteins, cell adhesion/cellular matrix and vesicle trafficking genes

1 reference

https://pubmed.ncbi.nlm.nih.gov/27611585

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Possible involvement of complement factor C1q in the clearance of extracellular neuromelanin from the substantia nigra in Parkinson disease

1 reference

https://pubmed.ncbi.nlm.nih.gov/27611585

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1371/JOURNAL.PONE.0161567

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27611585%20AND%20SRC:MED&resulttype=core&format=json

22 March 2020

2016PLoSO..1161567M

0 references

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27611585%20AND%20SRC:MED&resulttype=core&format=json

22 March 2020

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27611585%20AND%20SRC:MED&resulttype=core&format=json

22 March 2020

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