(Q36128228)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27611697%20AND%20SRC:MED&resulttype=core&format=json

22 March 2020

title

A quantitative protocol for DNA metabarcoding of springtails (Collembola) (English)

1 reference

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22 March 2020

0 references

2

1 reference

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22 March 2020

Nobuhiro Kaneko

8

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22 March 2020

author name string

Seikoh Saitoh

1

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22 March 2020

Saori Fujii

3

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22 March 2020

Haruki Sunagawa

4

1 reference

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22 March 2020

Hideki Nagahama

5

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22 March 2020

Masako Akutsu

6

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22 March 2020

Naoya Shinzato

7

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22 March 2020

Taizo Nakamori

9

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22 March 2020

publication date

1 September 2016

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22 March 2020

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22 March 2020

volume

59

1 reference

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22 March 2020

issue

9

1 reference

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22 March 2020

page(s)

705-723

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Quantifying microbial communities with 454 pyrosequencing: does read abundance count?

22 March 2020

cites work

1 reference

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Barcoded primers used in multiplex amplicon pyrosequencing bias amplification

21 January 2018

1 reference

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iCODEHOP: a new interactive program for designing COnsensus-DEgenerate Hybrid Oligonucleotide Primers from multiply aligned protein sequences

21 January 2018

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DNA metabarcoding of insects and allies: an evaluation of primers and pipelines.

21 January 2018

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Spider: an R package for the analysis of species identity and evolution, with particular reference to DNA barcoding

21 January 2018

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QIIME allows analysis of high-throughput community sequencing data

21 January 2018

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Phylogenetic analysis of mitochondrial protein coding genes confirms the reciprocal paraphyly of Hexapoda and Crustacea

21 January 2018

1 reference

https://api.crossref.org/works/10.1139%2FGEN-2015-0228

Collembola, the biological species concept and the underestimation of global species richness

21 January 2018

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Environmental metabarcodes for insects: in silico PCR reveals potential for taxonomic bias

21 January 2018

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Mitochondrial genomes suggest that hexapods and crustaceans are mutually paraphyletic

21 January 2018

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DNA metabarcoding multiplexing and validation of data accuracy for diet assessment: application to omnivorous diet

21 January 2018

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DNA metabarcoding and the cytochrome c oxidase subunit I marker: not a perfect match

21 January 2018

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NGS metabarcoding proves successful for quantitative assessment of symbiont abundance: the case of feather mites on birds.

21 January 2018

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Can DNA-Based Ecosystem Assessments Quantify Species Abundance? Testing Primer Bias and Biomass--Sequence Relationships with an Innovative Metabarcoding Protocol.

21 January 2018

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Second-generation environmental sequencing unmasks marine metazoan biodiversity

21 January 2018

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Environmental barcoding: a next-generation sequencing approach for biomonitoring applications using river benthos

21 January 2018

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Biological identifications through DNA barcodes

21 January 2018

1 reference

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A metagenetic approach for revealing community structure of marine planktonic copepods

21 January 2018

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Clustal W and Clustal X version 2.0

21 January 2018

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A new versatile primer set targeting a short fragment of the mitochondrial COI region for metabarcoding metazoan diversity: application for characterizing coral reef fish gut contents

21 January 2018

1 reference

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PCR primers for metazoan nuclear 18S and 28S ribosomal DNA sequences

21 January 2018

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DNA rehybridization during PCR: the 'Cot effect' and its consequences

21 January 2018

1 reference

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DNA barcoding and taxonomy in Diptera: a tale of high intraspecific variability and low identification success

21 January 2018

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DNA barcoding: error rates based on comprehensive sampling

21 January 2018

1 reference

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A new species of Ceratophysella (Collembola: Hypogastruridae) from Japan, with notes on its DNA barcode and a key to Japanese species in the genus

21 January 2018

1 reference

https://api.crossref.org/works/10.1139%2FGEN-2015-0228

The complete mitochondrial DNA sequence of the basal hexapod Tetrodontophora bielanensis: evidence for heteroplasmy and tRNA translocations

21 January 2018

1 reference

https://api.crossref.org/works/10.1139%2FGEN-2015-0228

Hexapod origins: monophyletic or paraphyletic?

21 January 2018

1 reference

https://api.crossref.org/works/10.1139%2FGEN-2015-0228

Contrasting seasonal niche separation between rare and abundant taxa conceals the extent of protist diversity

21 January 2018

1 reference

https://api.crossref.org/works/10.1139%2FGEN-2015-0228

Evaluating high-throughput sequencing as a method for metagenomic analysis of nematode diversity.

21 January 2018

1 reference

https://api.crossref.org/works/10.1139%2FGEN-2015-0228

Reproducibility of read numbers in high-throughput sequencing analysis of nematode community composition and structure

21 January 2018

1 reference

https://api.crossref.org/works/10.1139%2FGEN-2015-0228

Cryptic diversity in the ubiquist species Parisotoma notabilis (Collembola, Isotomidae): a long-used chimeric species?

21 January 2018

1 reference

https://api.crossref.org/works/10.1139%2FGEN-2015-0228

Barcoding the Collembola of Churchill: a molecular taxonomic reassessment of species diversity in a sub-Arctic area

21 January 2018

1 reference

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PyroClean: denoising pyrosequences from protein-coding amplicons for the recovery of interspecific and intraspecific genetic variation

21 January 2018

1 reference

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BARCODING: bold: The Barcode of Life Data System (http://www.barcodinglife.org)

21 January 2018

1 reference

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Many species in one: DNA barcoding overestimates the number of species when nuclear mitochondrial pseudogenes are coamplified

21 January 2018

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Towards next-generation biodiversity assessment using DNA metabarcoding

21 January 2018

1 reference

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Quantitative DNA metabarcoding: improved estimates of species proportional biomass using correction factors derived from control material

21 January 2018

1 reference

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High divergence across the whole mitochondrial genome in the "pan-Antarctic" springtail Friesea grisea: evidence for cryptic species?

21 January 2018

1 reference

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Blocking primers to enhance PCR amplification of rare sequences in mixed samples - a case study on prey DNA in Antarctic krill stomachs

21 January 2018

1 reference

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GMAP: a genomic mapping and alignment program for mRNA and EST sequences

21 January 2018

1 reference

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Molecular phylogeny of Collembola inferred from ribosomal RNA genes

21 January 2018

1 reference

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Biodiversity soup: metabarcoding of arthropods for rapid biodiversity assessment and biomonitoring

21 January 2018

1 reference

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A greedy algorithm for aligning DNA sequences

21 January 2018

1 reference

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21 January 2018

Identifiers

DOI

10.1139/GEN-2015-0228

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27611697%20AND%20SRC:MED&resulttype=core&format=json

22 March 2020

1 reference