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Expanding the UniFrac Toolbox
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instance of
scholarly article
1 reference
stated in
Europe PubMed Central
PMCID
5025018
retrieved
12 August 2017
title
Expanding the UniFrac Toolbox
(English)
1 reference
stated in
Europe PubMed Central
PMCID
5025018
retrieved
12 August 2017
author
Gregory B. Gloor
series ordinal
3
1 reference
stated in
Europe PubMed Central
PMCID
5025018
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27632205%20AND%20SRC:MED&resulttype=core&format=json
retrieved
31 May 2020
author name string
Ruth G Wong
series ordinal
1
1 reference
stated in
Europe PubMed Central
PMCID
5025018
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27632205%20AND%20SRC:MED&resulttype=core&format=json
retrieved
31 May 2020
Jia R Wu
series ordinal
2
1 reference
stated in
Europe PubMed Central
PMCID
5025018
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27632205%20AND%20SRC:MED&resulttype=core&format=json
retrieved
31 May 2020
language of work or name
English
0 references
publication date
15 September 2016
1 reference
stated in
Europe PubMed Central
PMCID
5025018
retrieved
12 August 2017
published in
PLOS One
1 reference
stated in
Europe PubMed Central
PMCID
5025018
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27632205%20AND%20SRC:MED&resulttype=core&format=json
retrieved
31 May 2020
volume
11
1 reference
stated in
Europe PubMed Central
PMCID
5025018
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27632205%20AND%20SRC:MED&resulttype=core&format=json
retrieved
31 May 2020
issue
9
1 reference
stated in
Europe PubMed Central
PMCID
5025018
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27632205%20AND%20SRC:MED&resulttype=core&format=json
retrieved
31 May 2020
page(s)
e0161196
1 reference
stated in
Europe PubMed Central
PMCID
5025018
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27632205%20AND%20SRC:MED&resulttype=core&format=json
retrieved
31 May 2020
copyright license
Creative Commons Attribution 4.0 International
start time
15 September 2016
1 reference
stated in
April 2022 Public Data File from Crossref
copyright status
copyrighted
0 references
cites work
Compositional analysis: a valid approach to analyze microbiome high-throughput sequencing data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5025018
retrieved
2 October 2017
DADA2: High-resolution sample inference from Illumina amplicon data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5025018
retrieved
2 October 2017
It's all relative: analyzing microbiome data as compositions
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5025018
retrieved
2 October 2017
Diet-induced extinctions in the gut microbiota compound over generations
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5025018
retrieved
2 October 2017
Human milk microbiota profiles in relation to birthing method, gestation and infant gender
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5025018
retrieved
2 October 2017
Methods for Improving Human Gut Microbiome Data by Reducing Variability through Sample Processing and Storage of Stool
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5025018
retrieved
2 October 2017
Proportionality: a valid alternative to correlation for relative data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5025018
retrieved
2 October 2017
Unifying the analysis of high-throughput sequencing datasets: characterizing RNA-seq, 16S rRNA gene sequencing and selective growth experiments by compositional data analysis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5025018
retrieved
2 October 2017
Microbiota modulate behavioral and physiological abnormalities associated with neurodevelopmental disorders
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5025018
retrieved
2 October 2017
ANOVA-like differential expression (ALDEx) analysis for mixed population RNA-Seq
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5025018
retrieved
2 October 2017
Cohabiting family members share microbiota with one another and with their dogs
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5025018
retrieved
2 October 2017
Gut microbiomes of Malawian twin pairs discordant for kwashiorkor
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5025018
retrieved
2 October 2017
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5025018
retrieved
2 October 2017
Inferring correlation networks from genomic survey data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5025018
retrieved
2 October 2017
The phylogenetic Kantorovich-Rubinstein metric for environmental sequence samples
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5025018
retrieved
2 October 2017
Associating microbiome composition with environmental covariates using generalized UniFrac distances
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5025018
retrieved
2 October 2017
Evaluation of subsampling-based normalization strategies for tagged high-throughput sequencing data sets from gut microbiomes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5025018
retrieved
2 October 2017
Microbiome profiling by illumina sequencing of combinatorial sequence-tagged PCR products
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5025018
retrieved
2 October 2017
UniFrac: an effective distance metric for microbial community comparison
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5025018
retrieved
2 October 2017
Search and clustering orders of magnitude faster than BLAST
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5025018
retrieved
2 October 2017
Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5025018
retrieved
2 October 2017
QIIME allows analysis of high-throughput community sequencing data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5025018
retrieved
2 October 2017
Quantitative PCR assessments of bacterial species in women with and without bacterial vaginosis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5025018
retrieved
2 October 2017
FastTree 2--approximately maximum-likelihood trees for large alignments
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5025018
retrieved
2 October 2017
Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5025018
retrieved
2 October 2017
The Ribosomal Database Project: improved alignments and new tools for rRNA analysis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5025018
retrieved
2 October 2017
A renaissance for the pioneering 16S rRNA gene
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5025018
retrieved
2 October 2017
The human microbiome project
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5025018
retrieved
2 October 2017
Quantitative and qualitative beta diversity measures lead to different insights into factors that structure microbial communities
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5025018
retrieved
2 October 2017
Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5025018
retrieved
2 October 2017
Toward Automatic Reconstruction of a Highly Resolved Tree of Life
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5025018
retrieved
2 October 2017
UniFrac: a new phylogenetic method for comparing microbial communities
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5025018
retrieved
2 October 2017
MUSCLE: multiple sequence alignment with high accuracy and high throughput
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5025018
retrieved
2 October 2017
A mathematical theory of communication
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0161196
retrieved
21 January 2018
zCompositions — R package for multivariate imputation of left-censored data under a compositional approach
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0161196
retrieved
21 January 2018
Identifiers
DOI
10.1371/JOURNAL.PONE.0161196
1 reference
stated in
Europe PubMed Central
PMCID
5025018
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27632205%20AND%20SRC:MED&resulttype=core&format=json
retrieved
31 May 2020
ADS bibcode
2016PLoSO..1161196W
0 references
PMCID
5025018
1 reference
stated in
Europe PubMed Central
PMCID
5025018
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27632205%20AND%20SRC:MED&resulttype=core&format=json
retrieved
31 May 2020
PubMed ID
27632205
1 reference
stated in
Europe PubMed Central
PMCID
5025018
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27632205%20AND%20SRC:MED&resulttype=core&format=json
retrieved
31 May 2020
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