(Q36200857)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26490019%20AND%20SRC:MED&resulttype=core&format=json

27 February 2020

title

ChEC-seq kinetics discriminates transcription factor binding sites by DNA sequence and shape in vivo (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26490019%20AND%20SRC:MED&resulttype=core&format=json

Corrigendum: ChEC-seq kinetics discriminates transcription factor binding sites by DNA sequence and shape in vivo

27 February 2020

corrigendum / erratum

0 references

Corrigendum: ChEC-seq kinetics discriminates transcription factor binding sites by DNA sequence and shape in vivo

0 references

author

Gabriel E Zentner

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26490019%20AND%20SRC:MED&resulttype=core&format=json

27 February 2020

author name string

Sivakanthan Kasinathan

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26490019%20AND%20SRC:MED&resulttype=core&format=json

27 February 2020

Beibei Xin

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26490019%20AND%20SRC:MED&resulttype=core&format=json

27 February 2020

Remo Rohs

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26490019%20AND%20SRC:MED&resulttype=core&format=json

27 February 2020

Steven Henikoff

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26490019%20AND%20SRC:MED&resulttype=core&format=json

27 February 2020

language of work or name

English

0 references

publication date

22 October 2015

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26490019%20AND%20SRC:MED&resulttype=core&format=json

27 February 2020

published in

Nature Communications

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26490019%20AND%20SRC:MED&resulttype=core&format=json

27 February 2020

volume

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26490019%20AND%20SRC:MED&resulttype=core&format=json

27 February 2020

page(s)

8733

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26490019%20AND%20SRC:MED&resulttype=core&format=json

https://scigraph.springernature.com/pub.10.1038/ncomms9733

27 February 2020

exact match

0 references

cites work

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1 October 2017

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1 October 2017

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A compendium of nucleosome and transcript profiles reveals determinants of chromatin architecture and transcription

1 October 2017

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Insulin-like growth factor binding proteins increase intracellular calcium levels in two different cell lines

1 October 2017

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1 October 2017

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DNA regions bound at low occupancy by transcription factors do not drive patterned reporter gene expression in Drosophila

1 October 2017

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An expansive human regulatory lexicon encoded in transcription factor footprints

1 October 2017

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The Reb1-homologue Ydr026c/Nsi1 is required for efficient RNA polymerase I termination in yeast

1 October 2017

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1 October 2017

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Imaging calcium in neurons

1 October 2017

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1 October 2017

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Tripartite organization of centromeric chromatin in budding yeast

1 October 2017

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Comprehensive genome-wide protein-DNA interactions detected at single-nucleotide resolution

1 October 2017

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ScerTF: a comprehensive database of benchmarked position weight matrices for Saccharomyces species

1 October 2017

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The orientation of the C-terminal domain of the Saccharomyces cerevisiae Rap1 protein is determined by its binding to DNA

1 October 2017

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1 October 2017

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Animal transcription networks as highly connected, quantitative continua

1 October 2017

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1 October 2017

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1 October 2017

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Extensive role of the general regulatory factors, Abf1 and Rap1, in determining genome-wide chromatin structure in budding yeast

1 October 2017

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Systematic protein location mapping reveals five principal chromatin types in Drosophila cells

1 October 2017

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1 October 2017

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Alternative chromatin structures of the 35S rRNA genes in Saccharomyces cerevisiae provide a molecular basis for the selective recruitment of RNA polymerases I and II.

1 October 2017

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1 October 2017

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Impact of chromatin structures on DNA processing for genomic analyses

1 October 2017

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Mechanisms that specify promoter nucleosome location and identity

1 October 2017

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Enzymatic assembly of DNA molecules up to several hundred kilobases

1 October 2017

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Where does mediator bind in vivo?

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4618392

Structural and Functional Studies of the Rap1 C-Terminus Reveal Novel Separation-of-Function Mutants

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4618392

Actively transcribed rRNA genes in S. cerevisiae are organized in a specialized chromatin associated with the high-mobility group protein Hmo1 and are largely devoid of histone molecules.

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4618392

Detection of in vivo protein-DNA interactions using DamID in mammalian cells

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4618392

DamID, a new tool for studying plant chromatin profiling in vivo, and its use to identify putative LHP1 target loci

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4618392

An improved map of conserved regulatory sites for Saccharomyces cerevisiae

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4618392

Kinetics of protein-DNA interaction: facilitated target location in sequence-dependent potential

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4618392

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1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4618392

Global analysis of protein expression in yeast

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4618392

Melanocortin receptor-mediated mobilization of intracellular free calcium in HEK293 cells

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4618392

Rapid androgen actions on calcium signaling in rat sertoli cells and two human prostatic cell lines: similar biphasic responses between 1 picomolar and 100 nanomolar concentrations

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4618392

Rapid and reliable protein extraction from yeast

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4618392

Identification of in vivo DNA targets of chromatin proteins using tethered dam methyltransferase

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4618392

Yeast autonomously replicating sequence binding factor is involved in nucleotide excision repair.

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4618392

Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cerevisiae

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4618392

The REB1 site is an essential component of a terminator for RNA polymerase I in Saccharomyces cerevisiae

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4618392

Involvement of the silencer and UAS binding protein RAP1 in regulation of telomere length

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4618392

Association of RAP1 binding sites with stringent control of ribosomal protein gene transcription in Saccharomyces cerevisiae

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4618392

Role of multifunctional autonomously replicating sequence binding factor 1 in the initiation of DNA replication and transcriptional control in Saccharomyces cerevisiae

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4618392

Mot1 redistributes TBP from TATA-containing to TATA-less promoters.

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4618392

Concerted action of the transcriptional activators REB1, RAP1, and GCR1 in the high-level expression of the glycolytic gene TPI.

2 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4618392

Snapin accelerates exocytosis at low intracellular calcium concentration in mouse chromaffin cells.

2 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4618392

DNAshape: a method for the high-throughput prediction of DNA structural features on a genomic scale.

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4618392

The inner nuclear membrane proteins Man1 and Ima1 link to two different types of chromatin at the nuclear periphery in S. pombe

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4618392

Nup-PI: the nucleopore-promoter interaction of genes in yeast

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4618392

Formaldehyde cross-linking for studying nucleosomal dynamics

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4618392

Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cerevisiae

22 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNCOMMS9733

ChIC and ChEC; genomic mapping of chromatin proteins

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26490019

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Regulation of cellular Ca2+ by yeast vacuoles

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26490019

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

A Reb1p-binding site is required for efficient activation of the yeast RAP1 gene, but multiple binding sites for Rap1p are not essential

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26490019

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/NCOMMS9733

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26490019%20AND%20SRC:MED&resulttype=core&format=json

27 February 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26490019%20AND%20SRC:MED&resulttype=core&format=json

27 February 2020

PubMed publication ID

26490019

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26490019%20AND%20SRC:MED&resulttype=core&format=json