(Q36216105)

12 August 2017

Proteobacterial ArfA peptides are synthesized from non-stop messenger RNAs (English)

1 reference

12 August 2017

Ryan E Schaub

1

1 reference

12 August 2017

Stephen J Poole

2

1 reference

12 August 2017

Fernando Garza-Sánchez

3

1 reference

12 August 2017

Sarah Benbow

4

1 reference

12 August 2017

Christopher S Hayes

5

1 reference

12 August 2017

language of work or name

English

0 references

publication date

12 July 2012

1 reference

Journal of Biological Chemistry

12 August 2017

1 reference

12 August 2017

287

1 reference

12 August 2017

35

1 reference

12 August 2017

29765-29775

1 reference

The tmRNA ribosome-rescue system

12 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436202

The tmRNA-tagging mechanism and the control of gene expression: a review

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436202

SmpB as the handyman of tmRNA during trans-translation

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436202

tmRNA regulates synthesis of the ArfA ribosome rescue factor

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436202

YaeJ is a novel ribosome-associated protein in Escherichia coli that can hydrolyze peptidyl-tRNA on stalled ribosomes

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436202

Dom34:Hbs1 promotes subunit dissociation and peptidyl-tRNA drop-off to initiate no-go decay

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436202

Beyond ribosome rescue: tmRNA and co-translational processes

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436202

Kinetics of paused ribosome recycling in Escherichia coli

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436202

RNase II is important for A-site mRNA cleavage during ribosome pausing

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436202

UNAFold: software for nucleic acid folding and hybridization

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436202

Amino acid starvation and colicin D treatment induce A-site mRNA cleavage in Escherichia coli

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436202

Functional SmpB-ribosome interactions require tmRNA.

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436202

Lon protease degrades transfer-messenger RNA-tagged proteins

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436202

The tmRNA system for translational surveillance and ribosome rescue.

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436202

Diverse bacterial genomes encode an operon of two genes, one of which is an unusual class-I release factor that potentially recognizes atypical mRNA signals other than normal stop codons

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436202

Endonucleolytic cleavage of eukaryotic mRNAs with stalls in translation elongation

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436202

A previously uncharacterized role for small protein B (SmpB) in transfer messenger RNA-mediated trans-translation

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436202

Function of the SmpB tail in transfer-messenger RNA translation revealed by a nucleus-encoded form

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436202

TmRNA is required for correct timing of DNA replication in Caulobacter crescentus

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436202

Stop codons preceded by rare arginine codons are efficient determinants of SsrA tagging in Escherichia coli

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436202

A genome-scale analysis for identification of genes required for growth or survival of Haemophilus influenzae

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436202

SsrA-mediated tagging in Bacillus subtilis

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436202

Identification of endogenous SsrA-tagged proteins reveals tagging at positions corresponding to stop codons.

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436202

GreA and GreB proteins revive backtracked RNA polymerase in vivo by promoting transcript trimming

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436202

Charged tmRNA but not tmRNA-mediated proteolysis is essential for Neisseria gonorrhoeae viability

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436202

Degradation of carboxy-terminal-tagged cytoplasmic proteins by the Escherichia coli protease HflB (FtsH)

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436202

The ClpXP and ClpAP proteases degrade proteins with carboxy-terminal peptide tails added by the SsrA-tagging system

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436202

Regulation of ribonuclease III processing by double-helical sequence antideterminants

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436202

Role of a peptide tagging system in degradation of proteins synthesized from damaged messenger RNA

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436202

Use of bacteriophage T7 RNA polymerase to direct selective high-level expression of cloned genes

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436202

Dissociation by Pelota, Hbs1 and ABCE1 of mammalian vacant 80S ribosomes and stalled elongation complexes

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436202

Prolyl-tRNA(Pro) in the A-site of SecM-arrested ribosomes inhibits the recruitment of transfer-messenger RNA.

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436202

SsrA-mediated trans-translation plays a role in mRNA quality control by facilitating degradation of truncated mRNAs

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436202

SmpB, a unique RNA-binding protein essential for the peptide-tagging activity of SsrA (tmRNA).

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436202

Transposition of the lac region of Escherichia coli. I. Inversion of the lac operon and transduction of lac by phi80.

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436202

10Sa RNA, a small stable RNA of Escherichia coli, is functional.

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436202

The Saccharomyces cerevisiae genes (CMP1 and CMP2) encoding calmodulin-binding proteins homologous to the catalytic subunit of mammalian protein phosphatase 2B.

29 June 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M112.374074

Ribosome rescue by Escherichia coli ArfA (YhdL) in the absence of trans-translation system.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M112.374074

Characterization of RNA sequence determinants and antideterminants of processing reactivity for a minimal substrate of Escherichia coli ribonuclease III.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M112.374074

Proline residues at the C terminus of nascent chains induce SsrA tagging during translation termination

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M112.374074

Escherichia coli YaeJ protein mediates a novel ribosome-rescue pathway distinct from SsrA- and ArfA-mediated pathways.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M112.374074

Function of transcription cleavage factors GreA and GreB at a regulatory pause site

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22791716

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Cleavage of the A site mRNA codon during ribosome pausing provides a mechanism for translational quality control

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22791716

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

kinA mRNA is missing a stop codon in the undomesticated Bacillus subtilis strain ATCC 6051

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22791716

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1074/JBC.M112.374074

1 reference

12 August 2017

1 reference

12 August 2017

PubMed publication ID

22791716

1 reference