(Q36218116)

12 August 2017

CBrowse: a SAM/BAM-based contig browser for transcriptome assembly visualization and analysis (English)

1 reference

12 August 2017

1 reference

Pei Li

1

1 reference

12 August 2017

Guoli Ji

2

1 reference

12 August 2017

Min Dong

3

1 reference

12 August 2017

Emily Schmidt

4

1 reference

12 August 2017

Douglas Lenox

5

1 reference

12 August 2017

Liangliang Chen

6

1 reference

12 August 2017

Qi Liu

7

1 reference

12 August 2017

Lin Liu

8

1 reference

12 August 2017

Jie Zhang

9

1 reference

12 August 2017

Chun Liang

10

1 reference

12 August 2017

language of work or name

English

0 references

publication date

12 July 2012

1 reference

12 August 2017

3

1 reference

based on heuristic

inferred from page(s)

published in

Bioinformatics

1 reference

12 August 2017

28

1 reference

12 August 2017

18

1 reference

12 August 2017

2382-2384

1 reference

describes a project that uses

12 August 2017

SQL

1 reference

26 June 2022

https://europepmc.org/article/PMC/PMC3436847

based on heuristic

inferred from PubMed Central ID database lookup

cites work

iAssembler: a package for de novo assembly of Roche-454/Sanger transcriptome sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436847

Next-generation transcriptome assembly

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436847

Short read Illumina data for the de novo assembly of a non-model snail species transcriptome (Radix balthica, Basommatophora, Pulmonata), and a comparison of assembler performance

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436847

BamTools: a C++ API and toolkit for analyzing and managing BAM files

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436847

Critical assessment of assembly strategies for non-model species mRNA-Seq data and application of next-generation sequencing to the comparison of C(3) and C(4) species.

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436847

Genome-wide analysis of tandem repeats in Daphnia pulex--a comparative approach

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436847

Transcriptome sequencing in an ecologically important tree species: assembly, annotation, and marker discovery

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436847

JBrowse: a next-generation genome browser

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436847

The Sequence Alignment/Map format and SAMtools

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436847

Genome Projector: zoomable genome map with multiple views

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436847

The generic genome browser: a building block for a model organism system database

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436847

The human genome browser at UCSC

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436847

X:Map: annotation and visualization of genome structure for Affymetrix exon array analysis.

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436847

10.1093/BIOINFORMATICS/BTS443

29 June 2018

Identifiers

DOI

1 reference

journals/bioinformatics/LiJDSLCLLZL12

12 August 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

12 August 2017

PubMed publication ID

22789590

1 reference