(Q36234205)

12 August 2017

Spatio-temporal monitoring of deep-sea communities using metabarcoding of sediment DNA and RNA. (English)

1 reference

12 August 2017

0 references

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3

Pierre Taberlet

0 references

Eric Coissac

series ordinal

4

object named as

Eric Coissac

1 reference

12 August 2017

1

Magdalena Guardiola

1 reference

12 August 2017

6

Xavier Turon

1 reference

12 August 2017

Owen S Wangensteen

2

1 reference

12 August 2017

María Jesús Uriz

series ordinal

5

1 reference

12 August 2017

language of work or name

1 reference

21 December 2016

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12 August 2017

1 reference

12 August 2017

4

1 reference

12 August 2017

e2807

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Creative Commons Attribution 4.0 International

12 August 2017

start time

21 December 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

Hidden diversity of Acoelomorpha revealed through metabarcoding

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5180584

Censusing marine eukaryotic diversity in the twenty-first century

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5180584

Metabarcoding improves detection of eukaryotes from early biofouling communities: implications for pest monitoring and pathway management

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5180584

Please mind the gap - Visual census and cryptic biodiversity assessment at central Red Sea coral reefs

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5180584

Protist metabarcoding and environmental biomonitoring: Time for change

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5180584

Deep-Sea, Deep-Sequencing: Metabarcoding Extracellular DNA from Sediments of Marine Canyons

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5180584

High-throughput sequencing and morphology perform equally well for benthic monitoring of marine ecosystems

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5180584

Marine protist diversity in European coastal waters and sediments as revealed by high-throughput sequencing

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5180584

Meiofaunal community analysis by high-throughput sequencing: comparison of extraction, quality filtering, and clustering methods

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5180584

obitools: a unix-inspired software package for DNA metabarcoding

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5180584

Metagenetic tools for the census of marine meiofaunal biodiversity: An overview

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5180584

Metabarcoding of benthic eukaryote communities predicts the ecological condition of estuaries

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5180584

Early detection of eukaryotic communities from marine biofilm using high-throughput sequencing: an assessment of different sampling devices

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5180584

Metabarcoding is powerful yet still blind: a comparative analysis of morphological and molecular surveys of seagrass communities

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5180584

DNA barcoding and metabarcoding of standardized samples reveal patterns of marine benthic diversity

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5180584

Environmental metabarcoding reveals heterogeneous drivers of microbial eukaryote diversity in contrasting estuarine ecosystems

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5180584

High-throughput sequencing characterizes intertidal meiofaunal communities in northern Gulf of Mexico (Dauphin Island and Mobile Bay, Alabama).

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5180584

Next-generation environmental diversity surveys of foraminifera: preparing the future

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5180584

Metabarcoding vs. morphological identification to assess diatom diversity in environmental studies.

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5180584

eulerAPE: drawing area-proportional 3-Venn diagrams using ellipses

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5180584

Challenging the paradigms of deep-sea ecology

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5180584

Environmental monitoring. Harnessing DNA to improve environmental management

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5180584

Chronic and intensive bottom trawling impairs deep-sea biodiversity and ecosystem functioning

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5180584

Environmental DNA for wildlife biology and biodiversity monitoring

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5180584

Environmental monitoring through protist next-generation sequencing metabarcoding: assessing the impact of fish farming on benthic foraminifera communities

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5180584

Patterns of rare and abundant marine microbial eukaryotes

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5180584

Characterization of the 18S rRNA gene for designing universal eukaryote specific primers.

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5180584

Surviving in a marine desert: the sponge loop retains resources within coral reefs

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5180584

Reliable, verifiable and efficient monitoring of biodiversity via metabarcoding

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5180584

Ancient DNA complements microfossil record in deep-sea subsurface sediments

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5180584

Deep sequencing of subseafloor eukaryotic rRNA reveals active Fungi across marine subsurface provinces

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5180584

The Protist Ribosomal Reference database (PR2): a catalog of unicellular eukaryote small sub-unit rRNA sequences with curated taxonomy

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5180584

The widely used small subunit 18S rDNA molecule greatly underestimates true diversity in biodiversity surveys of the meiofauna

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5180584

Ploughing the deep sea floor

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5180584

Dramatic shifts in benthic microbial eukaryote communities following the Deepwater Horizon oil spill

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5180584

Towards next-generation biodiversity assessment using DNA metabarcoding

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5180584

Soil sampling and isolation of extracellular DNA from large amount of starting material suitable for metabarcoding studies.

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5180584

Sequencing our way towards understanding global eukaryotic biodiversity

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5180584

Metagenetic community analysis of microbial eukaryotes illuminates biogeographic patterns in deep-sea and shallow water sediments

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5180584

Meta-barcoding of 'dirt' DNA from soil reflects vertebrate biodiversity

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5180584

Man and the last great wilderness: human impact on the deep sea.

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5180584

Ultra-deep sequencing of foraminiferal microbarcodes unveils hidden richness of early monothalamous lineages in deep-sea sediments

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5180584

UCHIME improves sensitivity and speed of chimera detection

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5180584

Eukaryotic richness in the abyss: insights from pyrotag sequencing

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5180584

Clustering 16S rRNA for OTU prediction: a method of unsupervised Bayesian clustering

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5180584

Preservation, origin and genetic imprint of extracellular DNA in permanently anoxic deep-sea sediments.

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5180584

Second-generation environmental sequencing unmasks marine metazoan biodiversity

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5180584

Deep-sea biodiversity in the Mediterranean Sea: the known, the unknown, and the unknowable

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5180584

An in silico approach for the evaluation of DNA barcodes

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5180584

New insights into the diversity of marine picoeukaryotes

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5180584

Pyrosequencing enumerates and contrasts soil microbial diversity

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5180584

Microbial diversity in the deep sea and the underexplored "rare biosphere"

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5180584

Swarm: robust and fast clustering method for amplicon-based studies

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5180584

Genetic assessment of meiobenthic community composition and spatial distribution in coastal sediments along northern Gulf of Mexico.

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5180584

Metabarcoding of marine zooplankton: prospects, progress and pitfalls

22 September 2018

1 reference

https://api.crossref.org/works/10.7717%2FPEERJ.2807

Extracellular DNA plays a key role in deep-sea ecosystem functioning

21 January 2018

2 references

https://api.crossref.org/works/10.7717%2FPEERJ.2807

21 January 2018

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5180584

Adaptation of Hansenula polymorpha to methanol: a transcriptome analysis

21 October 2018

1 reference

https://api.crossref.org/works/10.7717%2FPEERJ.2807

Metagenetic analysis of patterns of distribution and diversity of marine meiobenthic eukaryotes

21 January 2018

1 reference

https://api.crossref.org/works/10.7717%2FPEERJ.2807

How will the ‘molecular revolution’ contribute to biological recording?

21 January 2018

1 reference

https://api.crossref.org/works/10.7717%2FPEERJ.2807

REVIEW: The detection of aquatic animal species using environmental DNA - a review of eDNA as a survey tool in ecology

21 January 2018

1 reference

https://api.crossref.org/works/10.7717%2FPEERJ.2807

Environmental DNA – An emerging tool in conservation for monitoring past and present biodiversity

21 January 2018

1 reference

https://api.crossref.org/works/10.7717%2FPEERJ.2807

Effect of commercial trawling on the deep sedimentation in a Mediterranean submarine canyon

21 January 2018

1 reference

https://api.crossref.org/works/10.7717%2FPEERJ.2807

Organic matter in sediments of canyons and open slopes of the Portuguese, Catalan, Southern Adriatic and Cretan Sea margins

21 January 2018

1 reference

https://api.crossref.org/works/10.7717%2FPEERJ.2807

Integrated study of Mediterranean deep canyons: Novel results and future challenges

21 January 2018

1 reference

https://api.crossref.org/works/10.7717%2FPEERJ.2807

Spatial and temporal infaunal dynamics of the Blanes submarine canyon-slope system (NW Mediterranean); changes in nematode standing stocks, feeding types and gender-life stage ratios

21 January 2018

1 reference

https://api.crossref.org/works/10.7717%2FPEERJ.2807

Multiple drivers of particle fluxes in the Blanes submarine canyon and southern open slope: Results of a year round experiment

21 January 2018

1 reference

https://api.crossref.org/works/10.7717%2FPEERJ.2807

Megabenthic diversity patterns and community structure of the Blanes submarine canyon and adjacent slope in the Northwestern Mediterranean: a human overprint?

21 January 2018

1 reference

https://api.crossref.org/works/10.7717%2FPEERJ.2807

Spatial and temporal variability of meiobenthic density in the Blanes submarine canyon (NW Mediterranean)

21 January 2018

1 reference

https://api.crossref.org/works/10.7717%2FPEERJ.2807

Particle fluxes dynamics in Blanes submarine canyon (Northwestern Mediterranean)

21 January 2018

1 reference

https://api.crossref.org/works/10.7717%2FPEERJ.2807

a-, β-, γ-, δ- and ε-diversity of deep-sea nematodes in canyons and open slopes of Northeast Atlantic and Mediterranean margins

21 January 2018

1 reference

https://api.crossref.org/works/10.7717%2FPEERJ.2807

21 January 2018

Identifiers

DOI

10.7717/PEERJ.2807

1 reference

12 August 2017

1 reference

12 August 2017

PubMed publication ID

28028473

1 reference