(Q36266993)

13 August 2017

1 reference

title

'The 39 steps' in gene expression profiling: critical issues and proposed best practices for microarray experiments (English)

1 reference

13 August 2017

1 reference

2

Charles Auffray

1 reference

13 August 2017

Sandrine Imbeaud

1

1 reference

ORCID Public Data File 2021

publication date

1 September 2005

1 reference

13 August 2017

1 reference

13 August 2017

10

1 reference

13 August 2017

17

1 reference

13 August 2017

1175-1182

1 reference

From functional genomics to systems biology: concepts and practices

13 August 2017

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2805%2903565-8

7 January 2021

From the messenger RNA saga to the transcriptome era.

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2805%2903565-8

7 January 2021

Quantitative monitoring of gene expression patterns with a complementary DNA microarray

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2805%2903565-8

7 January 2021

The genexpress IMAGE knowledge base of the human muscle transcriptome: a resource of structural, functional, and positional candidate genes for muscle physiology and pathologies

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2805%2903565-8

7 January 2021

Genomics, gene expression and DNA arrays

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2805%2903565-8

7 January 2021

A comprehensive transcript index of the human genome generated using microarrays and computational approaches

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2805%2903565-8

7 January 2021

Genome-scale gene function prediction using multiple sources of high-throughput data in yeast Saccharomyces cerevisiae

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2805%2903565-8

7 January 2021

DNA microarray gene expression analysis technology and its application to neurological disorders

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2805%2903565-8

7 January 2021

Gene expression microarray technologies in the development of new therapeutic agents

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2805%2903565-8

7 January 2021

DNA array-based gene profiling: from surgical specimen to the molecular portrait of cancer

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2805%2903565-8

7 January 2021

Transcription profiling of gene expression in drug discovery and development: the NCI experience

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2805%2903565-8

7 January 2021

From traditional biomarkers to transcriptome analysis in drug development

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2805%2903565-8

7 January 2021

The role of transcriptome analysis in pre-clinical toxicology

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2805%2903565-8

7 January 2021

Maintaining data integrity in microarray data management.

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2805%2903565-8

7 January 2021

Design issues for cDNA microarray experiments

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2805%2903565-8

7 January 2021

Sample size for detecting differentially expressed genes in microarray experiments.

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2805%2903565-8

7 January 2021

A treasury of exceptions

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2805%2903565-8

7 January 2021

Gene index analysis of the human genome estimates approximately 120,000 genes.

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2805%2903565-8

7 January 2021

Estimate of human gene number provided by genome-wide analysis using Tetraodon nigroviridis DNA sequence

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2805%2903565-8

7 January 2021

Integrative annotation of 21,037 human genes validated by full-length cDNA clones

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2805%2903565-8

7 January 2021

Sequence dependence of cross-hybridization on short oligo microarrays

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2805%2903565-8

7 January 2021

Hybridization cross-reactivity within homologous gene families on glass cDNA microarrays

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2805%2903565-8

7 January 2021

A genomic view of alternative splicing

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2805%2903565-8

7 January 2021

Optimization of probe length and the number of probes per gene for optimal microarray analysis of gene expression

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2805%2903565-8

7 January 2021

In silico gene selection strategy for custom microarray design

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2805%2903565-8

7 January 2021

ACID: a database for microarray clone information

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2805%2903565-8

7 January 2021

Dynamic integration of gene annotation and its application to microarray analysis

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2805%2903565-8

7 January 2021

Minimum information about a microarray experiment (MIAME)-toward standards for microarray data

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2805%2903565-8

7 January 2021

eVOC: a controlled vocabulary for unifying gene expression data

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2805%2903565-8

7 January 2021

Moderate degradation does not preclude microarray analysis of small amounts of RNA.

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2805%2903565-8

7 January 2021

Towards standardization of RNA quality assessment using user-independent classifiers of microcapillary electrophoresis traces

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2805%2903565-8

7 January 2021

QA/QC: challenges and pitfalls facing the microarray community and regulatory agencies

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2805%2903565-8

7 January 2021

Microarray data normalization and transformation

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2805%2903565-8

7 January 2021

Validation of microarray image analysis accuracy

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2805%2903565-8

7 January 2021

Microarray segmentation methods significantly influence data precision

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2805%2903565-8

7 January 2021

Donuts, scratches and blanks: robust model-based segmentation of microarray images.

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2805%2903565-8

7 January 2021

Evaluation of normalization methods for microarray data

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2805%2903565-8

7 January 2021

Statistical monitoring of weak spots for improvement of normalization and ratio estimates in microarrays

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2805%2903565-8

7 January 2021

Quantitative quality control in microarray experiments and the application in data filtering, normalization and false positive rate prediction

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2805%2903565-8

7 January 2021

How can data quality and automation enhance confidence in microarray data?

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2805%2903565-8

7 January 2021

Defining transcription modules using large-scale gene expression data

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2805%2903565-8

7 January 2021

Ratio statistics of gene expression levels and applications to microarray data analysis

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2805%2903565-8

7 January 2021

Identifying differentially expressed genes using false discovery rate controlling procedures

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2805%2903565-8

7 January 2021

Self-organized living systems: conjunction of a stable organization with chaotic fluctuations in biological space-time.

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2805%2903565-8

7 January 2021

Quantifying the relationship between co-expression, co-regulation and gene function

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2805%2903565-8

7 January 2021

Comparisons and validation of statistical clustering techniques for microarray gene expression data

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2805%2903565-8

7 January 2021

Bagging to improve the accuracy of a clustering procedure

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2805%2903565-8

7 January 2021

Evaluation and optimization of clustering in gene expression data analysis

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2805%2903565-8

7 January 2021

Transitive functional annotation by shortest-path analysis of gene expression data

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2805%2903565-8

7 January 2021

Functional Annotation: extracting functional and regulatory order from microarrays

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2805%2903565-8

7 January 2021

Text-mining approaches in molecular biology and biomedicine

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2805%2903565-8

7 January 2021

Facts from text--is text mining ready to deliver?

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2805%2903565-8

7 January 2021

Ontologies in biology: design, applications and future challenges

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2805%2903565-8

7 January 2021

Gene-Ontology-based clustering of gene expression data

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2805%2903565-8

7 January 2021

Pathways to the analysis of microarray data

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2805%2903565-8

7 January 2021

Building a BRIDGE for the integration of heterogeneous data from functional genomics into a platform for systems biology

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2805%2903565-8

7 January 2021

Omic space: coordinate-based integration and analysis of genomic phenomic interactions.

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2805%2903565-8

7 January 2021

Pharmacogenomics and the drug discovery pipeline: when should it be implemented?

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2805%2903565-8

7 January 2021

A comparison of microarray databases

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2805%2903565-8

7 January 2021

Getting the right cells to the array: Gene expression microarray analysis of cell mixtures and sorted cells

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2805%2903565-8

7 January 2021

Noise in eukaryotic gene expression

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2805%2903565-8

7 January 2021

On the utility of pooling biological samples in microarray experiments

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2805%2903565-8

7 January 2021

Tissue ischemia time affects gene and protein expression patterns within minutes following surgical tumor excision

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2805%2903565-8

7 January 2021

Possible sources of dye-related signal correlation bias in two-color DNA microarray assays

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2805%2903565-8

7 January 2021

Standardization of protocols in cDNA microarray analysis.

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2805%2903565-8

7 January 2021

Statistical design of reverse dye microarrays

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2805%2903565-8

7 January 2021

Gains in sensitivity with a device that mixes microarray hybridization solution in a 25-microm-thick chamber

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2805%2903565-8

7 January 2021

10.1016/S1359-6446(05)03565-8

Identifiers

DOI

1 reference

13 August 2017

1 reference

PubMed ID

16182210