Home
Random
Nearby
Log in
Settings
Donate
About Wikidata
Disclaimers
Search
(Q36287609)
Watch
English
Set3 HDAC mediates effects of overlapping noncoding transcription on gene induction kinetics.
scientific article
In more languages
edit
Statements
instance of
scholarly article
1 reference
stated in
Europe PubMed Central
PMC publication ID
3461055
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22959268%20AND%20SRC:MED&resulttype=core&format=json
retrieved
12 February 2020
title
Set3 HDAC mediates effects of overlapping noncoding transcription on gene induction kinetics
(English)
1 reference
stated in
Europe PubMed Central
PMC publication ID
3461055
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22959268%20AND%20SRC:MED&resulttype=core&format=json
retrieved
12 February 2020
author
Sandra Clauder-Münster
series ordinal
3
1 reference
stated in
Europe PubMed Central
PMC publication ID
3461055
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22959268%20AND%20SRC:MED&resulttype=core&format=json
retrieved
12 February 2020
Lars M Steinmetz
series ordinal
4
1 reference
stated in
Europe PubMed Central
PMC publication ID
3461055
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22959268%20AND%20SRC:MED&resulttype=core&format=json
retrieved
12 February 2020
author name string
TaeSoo Kim
series ordinal
1
1 reference
stated in
Europe PubMed Central
PMC publication ID
3461055
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22959268%20AND%20SRC:MED&resulttype=core&format=json
retrieved
12 February 2020
Zhenyu Xu
series ordinal
2
1 reference
stated in
Europe PubMed Central
PMC publication ID
3461055
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22959268%20AND%20SRC:MED&resulttype=core&format=json
retrieved
12 February 2020
Stephen Buratowski
series ordinal
5
1 reference
stated in
Europe PubMed Central
PMC publication ID
3461055
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22959268%20AND%20SRC:MED&resulttype=core&format=json
retrieved
12 February 2020
language of work or name
English
0 references
publication date
6 September 2012
1 reference
stated in
Europe PubMed Central
PMC publication ID
3461055
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22959268%20AND%20SRC:MED&resulttype=core&format=json
retrieved
12 February 2020
published in
Cell
1 reference
stated in
Europe PubMed Central
PMC publication ID
3461055
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22959268%20AND%20SRC:MED&resulttype=core&format=json
retrieved
12 February 2020
volume
150
1 reference
stated in
Europe PubMed Central
PMC publication ID
3461055
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22959268%20AND%20SRC:MED&resulttype=core&format=json
retrieved
12 February 2020
issue
6
1 reference
stated in
Europe PubMed Central
PMC publication ID
3461055
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22959268%20AND%20SRC:MED&resulttype=core&format=json
retrieved
12 February 2020
page(s)
1158-1169
1 reference
stated in
Europe PubMed Central
PMC publication ID
3461055
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22959268%20AND%20SRC:MED&resulttype=core&format=json
retrieved
12 February 2020
cites work
Transcription of two long noncoding RNAs mediates mating-type control of gametogenesis in budding yeast
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461055
retrieved
30 September 2017
Expression noise and acetylation profiles distinguish HDAC functions
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461055
retrieved
30 September 2017
Single-cell analysis reveals that noncoding RNAs contribute to clonal heterogeneity by modulating transcription factor recruitment
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461055
retrieved
30 September 2017
Intragenic enhancers act as alternative promoters
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461055
retrieved
30 September 2017
Molecular mechanisms of long noncoding RNAs
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461055
retrieved
30 September 2017
Distinct RNA degradation pathways and 3' extensions of yeast non-coding RNA species
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461055
retrieved
30 September 2017
The specificity and topology of chromatin interaction pathways in yeast
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461055
retrieved
30 September 2017
The role of cotranscriptional histone methylations
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461055
retrieved
30 September 2017
Antisense expression increases gene expression variability and locus interdependency
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461055
retrieved
30 September 2017
Genetic analysis implicates the Set3/Hos2 histone deacetylase in the deposition and remodeling of nucleosomes containing H2A.Z.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461055
retrieved
30 September 2017
Genome-wide screen for inositol auxotrophy in Saccharomyces cerevisiae implicates lipid metabolism in stress response signaling
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461055
retrieved
30 September 2017
Alternative promoter usage at the Notch1 locus supports ligand-independent signaling in T cell development and leukemogenesis.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461055
retrieved
30 September 2017
MicroRNA functions in stress responses.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461055
retrieved
30 September 2017
Phosphorylated Pol II CTD Recruits Multiple HDACs, Including Rpd3C(S), for Methylation-Dependent Deacetylation of ORF Nucleosomes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461055
retrieved
30 September 2017
The Rpd3L HDAC complex is essential for the heat stress response in yeast.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461055
retrieved
30 September 2017
Toggle involving cis-interfering noncoding RNAs controls variegated gene expression in yeast
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461055
retrieved
30 September 2017
Dimethylation of H3K4 by Set1 recruits the Set3 histone deacetylase complex to 5' transcribed regions
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461055
retrieved
30 September 2017
ING4 Mediates Crosstalk between Histone H3 K4 Trimethylation and H3 Acetylation to Attenuate Cellular Transformation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461055
retrieved
30 September 2017
Bidirectional promoters generate pervasive transcription in yeast
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461055
retrieved
30 September 2017
Nutrient-regulated antisense and intragenic RNAs modulate a signal transduction pathway in yeast
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461055
retrieved
30 September 2017
Chromatin- and transcription-related factors repress transcription from within coding regions throughout the Saccharomyces cerevisiae genome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461055
retrieved
30 September 2017
Arginine methylation at histone H3R2 controls deposition of H3K4 trimethylation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461055
retrieved
30 September 2017
Selective anchoring of TFIID to nucleosomes by trimethylation of histone H3 lysine 4
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461055
retrieved
30 September 2017
The role of chromatin during transcription
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461055
retrieved
30 September 2017
Chromatin modifications and their function
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461055
retrieved
30 September 2017
Functional dissection of protein complexes involved in yeast chromosome biology using a genetic interaction map
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461055
retrieved
30 September 2017
Yeast Jhd2p is a histone H3 Lys4 trimethyl demethylase
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461055
retrieved
30 September 2017
Yng1 PHD Finger Binding to H3 Trimethylated at K4 Promotes NuA3 HAT Activity at K14 of H3 and Transcription at a Subset of Targeted ORFs
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461055
retrieved
30 September 2017
Proteome-wide analysis in Saccharomyces cerevisiae identifies several PHD fingers as novel direct and selective binding modules of histone H3 methylated at either lysine 4 or lysine 36.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461055
retrieved
30 September 2017
ING2 PHD domain links histone H3 lysine 4 methylation to active gene repression
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461055
retrieved
30 September 2017
A high-resolution map of transcription in the yeast genome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461055
retrieved
30 September 2017
Cotranscriptional set2 methylation of histone H3 lysine 36 recruits a repressive Rpd3 complex
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461055
retrieved
30 September 2017
Histone H3 methylation by Set2 directs deacetylation of coding regions by Rpd3S to suppress spurious intragenic transcription
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461055
retrieved
30 September 2017
Human but not yeast CHD1 binds directly and selectively to histone H3 methylated at lysine 4 via its tandem chromodomains
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461055
retrieved
30 September 2017
Genome-wide map of nucleosome acetylation and methylation in yeast
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461055
retrieved
30 September 2017
Single-nucleosome mapping of histone modifications in S. cerevisiae
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461055
retrieved
30 September 2017
A novel domain in Set2 mediates RNA polymerase II interaction and couples histone H3 K36 methylation with transcript elongation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461055
retrieved
30 September 2017
Intergenic transcription is required to repress the Saccharomyces cerevisiae SER3 gene
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461055
retrieved
30 September 2017
Global analysis of protein expression in yeast
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461055
retrieved
30 September 2017
Transcription elongation factors repress transcription initiation from cryptic sites.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461055
retrieved
30 September 2017
Methylation of histone H3 by Set2 in Saccharomyces cerevisiae is linked to transcriptional elongation by RNA polymerase II
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461055
retrieved
30 September 2017
Targeted recruitment of Set1 histone methylase by elongating Pol II provides a localized mark and memory of recent transcriptional activity
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461055
retrieved
30 September 2017
Association of the histone methyltransferase Set2 with RNA polymerase II plays a role in transcription elongation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461055
retrieved
30 September 2017
Set2 is a nucleosomal histone H3-selective methyltransferase that mediates transcriptional repression.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461055
retrieved
30 September 2017
The S. cerevisiae SET3 complex includes two histone deacetylases, Hos2 and Hst1, and is a meiotic-specific repressor of the sporulation gene program
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461055
retrieved
30 September 2017
H3 lysine 4 di- and tri-methylation deposited by cryptic transcription attenuates promoter activation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461055
retrieved
30 September 2017
The histone deacetylase Rpd3p is required for transient changes in genomic expression in response to stress
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461055
retrieved
29 June 2018
Infrequently transcribed long genes depend on the Set2/Rpd3S pathway for accurate transcription
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461055
retrieved
29 June 2018
Antisense transcription controls cell fate in Saccharomyces cerevisiae
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461055
retrieved
29 June 2018
XUTs are a class of Xrn1-sensitive antisense regulatory non-coding RNA in yeast.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461055
retrieved
22 September 2018
A ncRNA modulates histone modification and mRNA induction in the yeast GAL gene cluster
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461055
retrieved
22 September 2018
Requirement of Hos2 histone deacetylase for gene activity in yeast
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461055
retrieved
22 September 2018
In vivo site-directed mutagenesis using oligonucleotides
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461055
retrieved
22 September 2018
Combined Action of PHD and Chromo Domains Directs the Rpd3S HDAC to Transcribed Chromatin
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461055
retrieved
5 December 2018
Identifiers
DOI
10.1016/J.CELL.2012.08.016
1 reference
stated in
Europe PubMed Central
PMC publication ID
3461055
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22959268%20AND%20SRC:MED&resulttype=core&format=json
retrieved
12 February 2020
PMC publication ID
3461055
1 reference
stated in
Europe PubMed Central
PMC publication ID
3461055
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22959268%20AND%20SRC:MED&resulttype=core&format=json
retrieved
12 February 2020
PubMed publication ID
22959268
1 reference
stated in
Europe PubMed Central
PMC publication ID
3461055
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22959268%20AND%20SRC:MED&resulttype=core&format=json
retrieved
12 February 2020
ResearchGate publication ID
230836643
0 references
Sitelinks
Wikipedia
(0 entries)
edit
Wikibooks
(0 entries)
edit
Wikinews
(0 entries)
edit
Wikiquote
(0 entries)
edit
Wikisource
(0 entries)
edit
Wikiversity
(0 entries)
edit
Wikivoyage
(0 entries)
edit
Wiktionary
(0 entries)
edit
Multilingual sites
(0 entries)
edit
