(Q34715161)

4 August 2017

title

Antisense expression increases gene expression variability and locus interdependency (English)

1 reference

4 August 2017

Julien Gagneur

3

0 references

Lars M Steinmetz

object named as

Lars M Steinmetz

7

0 references

Wolfgang Huber

object named as

Wolfgang Huber

6

0 references

author name string

Zhenyu Xu

1

1 reference

4 August 2017

Wu Wei

2

1 reference

4 August 2017

Sandra Clauder-Münster

4

1 reference

4 August 2017

Miłosz Smolik

5

1 reference

4 August 2017

publication date

1 February 2011

1 reference

Molecular Systems Biology

4 August 2017

published in

1 reference

4 August 2017

volume

7

1 reference

4 August 2017

page(s)

468

1 reference

describes a project that uses

4 August 2017

limma

1 reference

22 June 2022

https://europepmc.org/article/PMC/3063692

based on heuristic

inferred from PubMed Central ID database lookup

cites work

Strand-specific RNA sequencing reveals extensive regulated long antisense transcripts that are conserved across yeast species

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3063692

Potent transcriptional interference by pausing of RNA polymerases over a downstream promoter

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3063692

H3 lysine 4 di- and tri-methylation deposited by cryptic transcription attenuates promoter activation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3063692

Bidirectional promoters generate pervasive transcription in yeast

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3063692

Ripples from neighbouring transcription.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3063692

Nutrient-regulated antisense and intragenic RNAs modulate a signal transduction pathway in yeast

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3063692

The antisense transcriptomes of human cells

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3063692

High-resolution mapping of meiotic crossovers and non-crossovers in yeast

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3063692

Tuning gene expression to changing environments: from rapid responses to evolutionary adaptation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3063692

A barrier nucleosome model for statistical positioning of nucleosomes throughout the yeast genome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3063692

Ontologizer 2.0--a multifunctional tool for GO term enrichment analysis and data exploration

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3063692

A cryptic unstable transcript mediates transcriptional trans-silencing of the Ty1 retrotransposon in S. cerevisiae

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3063692

Antisense RNA stabilization induces transcriptional gene silencing via histone deacetylation in S. cerevisiae.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3063692

Positive feedback regulates switching of phosphate transporters in S. cerevisiae

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3063692

Genome sequencing and comparative analysis of Saccharomyces cerevisiae strain YJM789.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3063692

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3063692

Genome-wide transcription and the implications for genomic organization

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3063692

A role for noncoding transcription in activation of the yeast PHO5 gene

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3063692

Transcriptional noise and the fidelity of initiation by RNA polymerase II.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3063692

Antisense transcription controls cell fate in Saccharomyces cerevisiae

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3063692

Single-cell proteomic analysis of S. cerevisiae reveals the architecture of biological noise

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3063692

A high-resolution map of transcription in the yeast genome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3063692

Transcriptional regulatory code of a eukaryotic genome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3063692

Statistical significance for genomewide studies

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3063692

Statistical Issues in cDNA Microarray Data Analysis

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3063692

Genomic expression programs in the response of yeast cells to environmental changes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3063692

A computational analysis of whole-genome expression data reveals chromosomal domains of gene expression

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3063692

Gene ontology: tool for the unification of biology

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3063692

Signaling and circuitry of multiple MAPK pathways revealed by a matrix of global gene expression profiles

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3063692

Amplification and adaptation in regulatory and sensory systems.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3063692

Identification and distinct regulation of yeast TATA box-containing genes

7 July 2018

1 reference

https://api.crossref.org/works/10.1038%2FMSB.2011.1

Transcriptome Complexity in a Genome-Reduced Bacterium

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FMSB.2011.1

A ncRNA modulates histone modification and mRNA induction in the yeast GAL gene cluster

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FMSB.2011.1

Transcript mapping with high-density oligonucleotide tiling arrays

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FMSB.2011.1

A genetic signature of interspecies variations in gene expression

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21326235

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/MSB.2011.1

1 reference

4 August 2017

1 reference

4 August 2017

1 reference