(Q37203938)

18 August 2017

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title

Tuning gene expression to changing environments: from rapid responses to evolutionary adaptation (English)

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18 August 2017

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3

Jürg Bähler

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author name string

Luis López-Maury

series ordinal

1

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18 August 2017

Samuel Marguerat

series ordinal

2

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18 August 2017

Jürg Bähler

series ordinal

3

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18 August 2017

publication date

1 August 2008

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18 August 2017

published in

Nature Reviews Genetics

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18 August 2017

volume

9

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18 August 2017

issue

8

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18 August 2017

page(s)

583-593

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Sensing the environment: lessons from fungi

18 August 2017

cites work

1 reference

Cell growth control: little eukaryotes make big contributions.

31 March 2020

1 reference

ERK and p38 MAPK-activated protein kinases: a family of protein kinases with diverse biological functions

31 March 2020

1 reference

TOR signaling in growth and metabolism

31 March 2020

1 reference

Remodeling of yeast genome expression in response to environmental changes

31 March 2020

1 reference

Global transcriptional responses of fission yeast to environmental stress

31 March 2020

1 reference

Genomic expression programs in the response of yeast cells to environmental changes

31 March 2020

1 reference

Role of the Hog1 stress-activated protein kinase in the global transcriptional response to stress in the fungal pathogen Candida albicans

31 March 2020

1 reference

Integration of Arabidopsis thaliana stress-related transcript profiles, promoter structures, and cell-specific expression

31 March 2020

1 reference

Genome wide analysis of common and specific stress responses in adult drosophila melanogaster

31 March 2020

1 reference

Gene expression profile analysis of Drosophila melanogaster selected for resistance to environmental stressors.

31 March 2020

1 reference

Diverse and specific gene expression responses to stresses in cultured human cells

31 March 2020

1 reference

Multiple pathways differentially regulate global oxidative stress responses in fission yeast

31 March 2020

1 reference

Functional discovery via a compendium of expression profiles

31 March 2020

1 reference

Molecular and evolutionary basis of the cellular stress response

31 March 2020

1 reference

Release of extraction-resistant mRNA in stationary phase Saccharomyces cerevisiae produces a massive increase in transcript abundance in response to stress

31 March 2020

1 reference

Cell identity mediates the response of Arabidopsis roots to abiotic stress.

31 March 2020

1 reference

The economics of ribosome biosynthesis in yeast

31 March 2020

1 reference

"Sleeping beauty": quiescence in Saccharomyces cerevisiae

31 March 2020

1 reference

Jekyll and Hyde in the microbial world

31 March 2020

1 reference

The transcriptional program of sporulation in budding yeast

31 March 2020

1 reference

Stress resistance of yeast cells is largely independent of cell cycle phase.

31 March 2020

1 reference

Genetic links between diet and lifespan: shared mechanisms from yeast to humans

31 March 2020

1 reference

Models, mechanisms and clinical evidence for cancer dormancy

31 March 2020

1 reference

Growth control of the eukaryote cell: a systems biology study in yeast

31 March 2020

1 reference

Coordination of growth rate, cell cycle, stress response, and metabolic activity in yeast

31 March 2020

1 reference

Growth-rate regulated genes have profound impact on interpretation of transcriptome profiling in Saccharomyces cerevisiae

31 March 2020

1 reference

Strategy of transcription regulation in the budding yeast.

31 March 2020

1 reference

Regulation of yeast replicative life span by TOR and Sch9 in response to nutrients

31 March 2020

1 reference

Identification and distinct regulation of yeast TATA box-containing genes

31 March 2020

1 reference

The regulatory code for transcriptional response diversity and its relation to genome structural properties in A. thaliana

31 March 2020

1 reference

Prevalence of the initiator over the TATA box in human and yeast genes and identification of DNA motifs enriched in human TATA-less core promoters

31 March 2020

1 reference

A genome-wide housekeeping role for TFIID and a highly regulated stress-related role for SAGA in Saccharomyces cerevisiae

31 March 2020

1 reference

Changes in genomewide occupancy of core transcriptional regulators during heat stress

31 March 2020

1 reference

Full and partial genome-wide assembly and disassembly of the yeast transcription machinery in response to heat shock

31 March 2020

1 reference

Switching of the core transcription machinery during myogenesis

31 March 2020

1 reference

TBP2, a vertebrate-specific member of the TBP family, is required in embryonic development of zebrafish.

31 March 2020

1 reference

Specialized and redundant roles of TBP and a vertebrate-specific TBP paralog in embryonic gene regulation in Xenopus

31 March 2020

1 reference

Initiation of zebrafish haematopoiesis by the TATA-box-binding protein-related factor Trf3

31 March 2020

1 reference

Breaking barriers to transcription elongation

31 March 2020

1 reference

A chromatin landmark and transcription initiation at most promoters in human cells

31 March 2020

1 reference

RNA polymerase is poised for activation across the genome

31 March 2020

1 reference

Genome-wide analyses reveal RNA polymerase II located upstream of genes poised for rapid response upon S. cerevisiae stationary phase exit.

31 March 2020

1 reference

RNA polymerase stalling at developmental control genes in the Drosophila melanogaster embryo

31 March 2020

1 reference

Population genetic variation in genome-wide gene expression.

31 March 2020

1 reference

Population genetic variation in gene expression is associated with phenotypic variation in Saccharomyces cerevisiae

31 March 2020

1 reference

The theory of facilitated variation

31 March 2020

1 reference

The evolutionary significance of cis-regulatory mutations

31 March 2020

1 reference

Genetics of global gene expression

31 March 2020

1 reference

Population genomics of human gene expression

31 March 2020

1 reference

Divergence of transcription factor binding sites across related yeast species

31 March 2020

1 reference

Tissue-specific transcriptional regulation has diverged significantly between human and mouse

31 March 2020

1 reference

Conservation and evolvability in regulatory networks: the evolution of ribosomal regulation in yeast

31 March 2020

1 reference

On the relation between promoter divergence and gene expression evolution

31 March 2020

1 reference

Microbial genetics: Evolution experiments with microorganisms: the dynamics and genetic bases of adaptation

31 March 2020

1 reference

Parallel changes in gene expression after 20,000 generations of evolution in Escherichiacoli

31 March 2020

1 reference

Evolutionary changes in heat-inducible gene expression in lines of Escherichia coli adapted to high temperature

31 March 2020

1 reference

Optimality and evolutionary tuning of the expression level of a protein

31 March 2020

1 reference

Systematic changes in gene expression patterns following adaptive evolution in yeast

31 March 2020

1 reference

Variability and robustness in biomolecular systems

31 March 2020

1 reference

Balancing robustness and evolvability

31 March 2020

1 reference

Single-cell proteomic analysis of S. cerevisiae reveals the architecture of biological noise

31 March 2020

1 reference

Phenotypic consequences of promoter-mediated transcriptional noise

31 March 2020

1 reference

Control of stochasticity in eukaryotic gene expression

31 March 2020

1 reference

Natural history and evolutionary principles of gene duplication in fungi

31 March 2020

1 reference

External factors accelerate expression divergence between duplicate genes

31 March 2020

1 reference

Bacterial persistence as a phenotypic switch

31 March 2020

1 reference

Stochastic switching as a survival strategy in fluctuating environments

31 March 2020

1 reference

A genetic signature of interspecies variations in gene expression

31 March 2020

1 reference

Genetic properties influencing the evolvability of gene expression

31 March 2020

1 reference

Chance and necessity in cellular response to challenge

31 March 2020

1 reference

Functional profiling of the Saccharomyces cerevisiae genome

31 March 2020

1 reference

Cells have distinct mechanisms to maintain protection against different reactive oxygen species: oxidative-stress-response genes

31 March 2020

1 reference

High-resolution yeast phenomics resolves different physiological features in the saline response

31 March 2020

1 reference

Plastic and adaptive gene expression patterns associated with temperature stress in Arabidopsis thaliana.

31 March 2020

1 reference

Integrative analysis of genome-wide experiments in the context of a large high-throughput data compendium

31 March 2020

1 reference

Genome-wide transcriptional plasticity underlies cellular adaptation to novel challenge

31 March 2020

1 reference

Synthetic gene recruitment reveals adaptive reprogramming of gene regulation in yeast

31 March 2020

1 reference

Parallel adaptive evolution cultures of Escherichia coli lead to convergent growth phenotypes with different gene expression states

31 March 2020

1 reference

Parallel changes in global protein profiles during long-term experimental evolution in Escherichia coli

31 March 2020

1 reference

Adaptive response of a gene network to environmental changes by fitness-induced attractor selection

31 March 2020

1 reference

A generic mechanism for adaptive growth rate regulation

31 March 2020

1 reference

Post-transcriptional control of gene expression: a genome-wide perspective.

31 March 2020

1 reference

A network of multiple regulatory layers shapes gene expression in fission yeast.

31 March 2020

1 reference

Multiple high-throughput analyses monitor the response of E. coli to perturbations

31 March 2020

1 reference

Genomic analysis of regulatory network dynamics reveals large topological changes

31 March 2020

1 reference

A predictive model for transcriptional control of physiology in a free living cell.

31 March 2020

1 reference

P bodies: at the crossroads of post-transcriptional pathways

31 March 2020

1 reference

P bodies and the control of mRNA translation and degradation

31 March 2020

1 reference

Relief of microRNA-mediated translational repression in human cells subjected to stress

31 March 2020

1 reference

Movement of eukaryotic mRNAs between polysomes and cytoplasmic processing bodies

31 March 2020

1 reference

31 March 2020

1 reference

Homodirectional changes in transcriptome composition and mRNA translation induced by rapamycin and heat shock

31 March 2020

1 reference

Translational control in stress and apoptosis

31 March 2020

1 reference

Intrinsic and extrinsic contributions to stochasticity in gene expression

31 March 2020

1 reference

Living with noisy genes: how cells function reliably with inherent variability in gene expression

31 March 2020

1 reference

Detours and shortcuts to transcription reinitiation

31 March 2020

1 reference

Epigenetic regulation and the variability of gene expression

31 March 2020

1 reference

Two strategies for gene regulation by promoter nucleosomes

31 March 2020

1 reference

Sex increases the efficacy of natural selection in experimental yeast populations

31 March 2020

1 reference

Turned on by stress. Plant retrotransposons

31 March 2020

1 reference

The significance of responses of the genome to challenge

31 March 2020

1 reference

Host genome surveillance for retrotransposons by transposon-derived proteins

31 March 2020

1 reference

Transgeneration memory of stress in plants.

31 March 2020

1 reference

Microbiology and evolution. Modulating mutation rates in the wild.

31 March 2020

1 reference

Environmental stresses can alleviate the average deleterious effect of mutations

31 March 2020

1 reference

Evolution of robustness to noise and mutation in gene expression dynamics

31 March 2020

1 reference

Under cover: causes, effects and implications of Hsp90-mediated genetic capacitance

31 March 2020

1 reference

Circadian rhythms from multiple oscillators: lessons from diverse organisms

31 March 2020

1 reference

Interplay of circadian clocks and metabolic rhythms

31 March 2020

1 reference

Post-translational modifications regulate the ticking of the circadian clock.

31 March 2020

1 reference

31 March 2020

Identifiers

DOI

10.1038/NRG2398

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18 August 2017

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