(Q42122006)

16 October 2017

Parallel adaptive evolution cultures of Escherichia coli lead to convergent growth phenotypes with different gene expression states (English)

1 reference

16 October 2017

1 reference

1 reference

1 reference

1 reference

3

Bernhard Ø Palsson

1 reference

16 October 2017

Stephen S Fong

1

1 reference

PMC publication ID

1240078

16 October 2017

Andrew R Joyce

series ordinal

2

1 reference

16 October 2017

1 October 2005

1 reference

16 October 2017

1 reference

16 October 2017

15

1 reference

16 October 2017

10

1 reference

16 October 2017

1365-1372

1 reference

The genetic theory of adaptation: a brief history

16 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1240078

EcoCyc: a comprehensive database resource for Escherichia coli

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1240078

Microarrays--status and prospects

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1240078

Computational identification of transcription factor binding sites by functional analysis of sets of genes sharing overrepresented upstream motifs

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1240078

Quantitative analysis of Escherichia coli metabolic phenotypes within the context of phenotypic phase planes.

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1240078

GenProtEC: an updated and improved analysis of functions of Escherichia coli K-12 proteins

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1240078

The effects of alternate optimal solutions in constraint-based genome-scale metabolic models

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1240078

Description and Interpretation of Adaptive Evolution of Escherichia coli K-12 MG1655 by Using a Genome-Scale In Silico Metabolic Model

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1240078

Exploration, normalization, and summaries of high density oligonucleotide array probe level data

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1240078

Statistical significance for genomewide studies

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1240078

Microbial genetics: Evolution experiments with microorganisms: the dynamics and genetic bases of adaptation

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1240078

The Changing Concept of Epigenetics

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1240078

Parallel changes in gene expression after 20,000 generations of evolution in Escherichiacoli

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1240078

Escherichia coli K-12 undergoes adaptive evolution to achieve in silico predicted optimal growth

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1240078

Fitness evolution and the rise of mutator alleles in experimental Escherichia coli populations.

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1240078

Statistical issues with microarrays: processing and analysis

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1240078

Evolutionary engineering of industrially important microbial phenotypes

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1240078

Lateral flagella and swarming motility in Aeromonas species

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1240078

Microarrays: handling the deluge of data and extracting reliable information

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1240078

Mechanisms causing rapid and parallel losses of ribose catabolism in evolving populations of Escherichia coli B.

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1240078

In silico predictions of Escherichia coli metabolic capabilities are consistent with experimental data

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1240078

Genetic architecture of thermal adaptation in Escherichia coli

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1240078

Systematic changes in gene expression patterns following adaptive evolution in yeast

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1240078

Different trajectories of parallel evolution during viral adaptation

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1240078

Genomic evolution during a 10,000-generation experiment with bacteria

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1240078

Parallel and divergent genotypic evolution in experimental populations of Ralstonia sp

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1240078

Evolution of Escherichia coli during growth in a constant environment

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1240078

Ethanol production from cellobiose, amorphous cellulose, and crystalline cellulose by recombinant Klebsiella oxytoca containing chromosomally integrated Zymomonas mobilis genes for ethanol production and plasmids expressing thermostable cellulase ge

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1240078

Global transcriptional programs reveal a carbon source foraging strategy by Escherichia coli

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1240078

Evolutionary changes in heat-inducible gene expression in lines of Escherichia coli adapted to high temperature

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1240078

Environmentally constrained mutation and adaptive evolution in Salmonella.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1240078

Evolution of competitive fitness in experimental populations of E. coli: what makes one genotype a better competitor than another?

17 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16204189

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

MultiFun, a multifunctional classification scheme for Escherichia coli K-12 gene products

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16204189

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1101/GR.3832305

1 reference

16 October 2017

1 reference

PMC publication ID

1240078

16 October 2017

PubMed publication ID

16204189

1 reference

PMC publication ID

1240078