Home
Random
Nearby
Log in
Settings
Donate
About Wikidata
Disclaimers
Search
(Q36290423)
Watch
English
Thermodynamic analysis of protegrin-1 insertion and permeation through a lipid bilayer
scientific article
In more languages
edit
Statements
instance of
scholarly article
1 reference
stated in
Europe PubMed Central
PMC publication ID
3461958
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22044268%20AND%20SRC:MED&resulttype=core&format=json
retrieved
15 January 2020
title
Thermodynamic analysis of protegrin-1 insertion and permeation through a lipid bilayer
(English)
1 reference
stated in
Europe PubMed Central
PMC publication ID
3461958
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22044268%20AND%20SRC:MED&resulttype=core&format=json
retrieved
15 January 2020
author
Yiannis N. Kaznessis
series ordinal
2
1 reference
stated in
Europe PubMed Central
PMC publication ID
3461958
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22044268%20AND%20SRC:MED&resulttype=core&format=json
retrieved
15 January 2020
author name string
Victor Vivcharuk
series ordinal
1
1 reference
stated in
Europe PubMed Central
PMC publication ID
3461958
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22044268%20AND%20SRC:MED&resulttype=core&format=json
retrieved
15 January 2020
language of work or name
English
0 references
publication date
18 November 2011
1 reference
stated in
Europe PubMed Central
PMC publication ID
3461958
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22044268%20AND%20SRC:MED&resulttype=core&format=json
retrieved
15 January 2020
published in
Journal of Physical Chemistry B
1 reference
stated in
Europe PubMed Central
PMC publication ID
3461958
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22044268%20AND%20SRC:MED&resulttype=core&format=json
retrieved
15 January 2020
volume
115
1 reference
stated in
Europe PubMed Central
PMC publication ID
3461958
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22044268%20AND%20SRC:MED&resulttype=core&format=json
retrieved
15 January 2020
issue
49
1 reference
stated in
Europe PubMed Central
PMC publication ID
3461958
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22044268%20AND%20SRC:MED&resulttype=core&format=json
retrieved
15 January 2020
page(s)
14704-14712
1 reference
stated in
Europe PubMed Central
PMC publication ID
3461958
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22044268%20AND%20SRC:MED&resulttype=core&format=json
retrieved
15 January 2020
cites work
All-atom empirical potential for molecular modeling and dynamics studies of proteins
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461958
retrieved
30 September 2017
Antimicrobial protegrin-1 forms amyloid-like fibrils with rapid kinetics suggesting a functional link
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461958
retrieved
30 September 2017
Free energy profile of the interaction between a monomer or a dimer of protegrin-1 in a specific binding orientation and a model lipid bilayer
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461958
retrieved
30 September 2017
Antimicrobial mechanism of pore-forming protegrin peptides: 100 pores to kill E. coli
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461958
retrieved
30 September 2017
Determining the orientation of protegrin-1 in DLPC bilayers using an implicit solvent-membrane model
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461958
retrieved
30 September 2017
Poisson-Nernst-Planck models of nonequilibrium ion electrodiffusion through a protegrin transmembrane pore
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461958
retrieved
30 September 2017
Models of toxic beta-sheet channels of protegrin-1 suggest a common subunit organization motif shared with toxic alzheimer beta-amyloid ion channels
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461958
retrieved
30 September 2017
Prediction of binding free energy for adsorption of antimicrobial peptide lactoferricin B on a POPC membrane
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461958
retrieved
30 September 2017
Arginine dynamics in a membrane-bound cationic beta-hairpin peptide from solid-state NMR.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461958
retrieved
30 September 2017
On the nature of antimicrobial activity: a model for protegrin-1 pores
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461958
retrieved
30 September 2017
Free energy profile of H-ras membrane anchor upon membrane insertion
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461958
retrieved
30 September 2017
Comparison of interactions between beta-hairpin decapeptides and SDS/DPC micelles from experimental and simulation data.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461958
retrieved
30 September 2017
Structure of the antimicrobial beta-hairpin peptide protegrin-1 in a DLPC lipid bilayer investigated by molecular dynamics simulation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461958
retrieved
30 September 2017
Peptide antimicrobial agents
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461958
retrieved
30 September 2017
Driving engineering of novel antimicrobial peptides from simulations of peptide-micelle interactions
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461958
retrieved
30 September 2017
Scalable molecular dynamics with NAMD
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461958
retrieved
30 September 2017
Molecular dynamics simulations of helical antimicrobial peptides in SDS micelles: what do point mutations achieve?
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461958
retrieved
30 September 2017
New tricks for modelers from the crystallography toolkit: the particle mesh Ewald algorithm and its use in nucleic acid simulations
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461958
retrieved
30 September 2017
Solution structure of protegrin-1, a broad-spectrum antimicrobial peptide from porcine leukocytes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461958
retrieved
30 September 2017
Molecular Dynamics Simulations of the Gramicidin Channel
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461958
retrieved
30 September 2017
Permeability of small nonelectrolytes through lipid bilayer membranes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461958
retrieved
30 September 2017
Exploring Multidimensional Free Energy Landscapes Using Time-Dependent Biases on Collective Variables.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461958
retrieved
29 June 2018
Exploring the free-energy landscape of a short peptide using an average force
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461958
retrieved
22 September 2018
How can a beta-sheet peptide be both a potent antimicrobial and harmfully toxic? Molecular dynamics simulations of protegrin-1 in micelles.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461958
retrieved
22 September 2018
Overcoming free energy barriers using unconstrained molecular dynamics simulations
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461958
retrieved
22 September 2018
Improved treatment of the protein backbone in empirical force fields.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461958
retrieved
22 September 2018
Membrane-bound dimer structure of a beta-hairpin antimicrobial peptide from rotational-echo double-resonance solid-state NMR
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461958
retrieved
21 October 2018
Beta-hairpin restraint potentials for calculations of potentials of mean force as a function of beta-hairpin tilt, rotation, and distance
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/22044268
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Folding and translocation of the undecamer of poly-L-leucine across the water-hexane interface. A molecular dynamics study
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/22044268
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Mechanism and kinetics of peptide partitioning into membranes from all-atom simulations of thermostable peptides
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/22044268
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
CHARMM-GUI: a web-based graphical user interface for CHARMM
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/22044268
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1021/JP205153Y
1 reference
stated in
Europe PubMed Central
PMC publication ID
3461958
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22044268%20AND%20SRC:MED&resulttype=core&format=json
retrieved
15 January 2020
PMC publication ID
3461958
1 reference
stated in
Europe PubMed Central
PMC publication ID
3461958
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22044268%20AND%20SRC:MED&resulttype=core&format=json
retrieved
15 January 2020
PubMed publication ID
22044268
1 reference
stated in
Europe PubMed Central
PMC publication ID
3461958
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22044268%20AND%20SRC:MED&resulttype=core&format=json
retrieved
15 January 2020
ResearchGate publication ID
51762024
0 references
Sitelinks
Wikipedia
(0 entries)
edit
Wikibooks
(0 entries)
edit
Wikinews
(0 entries)
edit
Wikiquote
(0 entries)
edit
Wikisource
(0 entries)
edit
Wikiversity
(0 entries)
edit
Wikivoyage
(0 entries)
edit
Wiktionary
(0 entries)
edit
Multilingual sites
(0 entries)
edit