Home
Random
Nearby
Log in
Settings
Donate
About Wikidata
Disclaimers
Search
(Q36319656)
Watch
English
Visualizing the structure of RNA-seq expression data using grade of membership models.
scientific article
In more languages
edit
Statements
instance of
scholarly article
1 reference
stated in
Europe PubMed Central
PMC publication ID
5363805
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28333934%20AND%20SRC:MED&resulttype=core&format=json
retrieved
13 March 2020
title
Visualizing the structure of RNA-seq expression data using grade of membership models
(English)
1 reference
stated in
Europe PubMed Central
PMC publication ID
5363805
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28333934%20AND%20SRC:MED&resulttype=core&format=json
retrieved
13 March 2020
main subject
RNA sequencing
0 references
visualization
1 reference
based on heuristic
inferred from title
RNA-Seq
1 reference
based on heuristic
inferred from title
author
Kushal K Dey
series ordinal
1
1 reference
stated in
Europe PubMed Central
PMC publication ID
5363805
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28333934%20AND%20SRC:MED&resulttype=core&format=json
retrieved
13 March 2020
Chiaowen Joyce Hsiao
series ordinal
2
1 reference
stated in
Europe PubMed Central
PMC publication ID
5363805
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28333934%20AND%20SRC:MED&resulttype=core&format=json
retrieved
13 March 2020
author name string
Matthew Stephens
series ordinal
3
1 reference
stated in
Europe PubMed Central
PMC publication ID
5363805
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28333934%20AND%20SRC:MED&resulttype=core&format=json
retrieved
13 March 2020
publication date
23 March 2017
1 reference
stated in
Europe PubMed Central
PMC publication ID
5363805
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28333934%20AND%20SRC:MED&resulttype=core&format=json
retrieved
13 March 2020
published in
PLOS Genetics
1 reference
stated in
Europe PubMed Central
PMC publication ID
5363805
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28333934%20AND%20SRC:MED&resulttype=core&format=json
retrieved
13 March 2020
volume
13
1 reference
stated in
Europe PubMed Central
PMC publication ID
5363805
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28333934%20AND%20SRC:MED&resulttype=core&format=json
retrieved
13 March 2020
issue
3
1 reference
stated in
Europe PubMed Central
PMC publication ID
5363805
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28333934%20AND%20SRC:MED&resulttype=core&format=json
retrieved
13 March 2020
page(s)
e1006599
1 reference
stated in
Europe PubMed Central
PMC publication ID
5363805
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28333934%20AND%20SRC:MED&resulttype=core&format=json
retrieved
13 March 2020
copyright license
Creative Commons Attribution 4.0 International
start time
23 March 2017
1 reference
stated in
April 2022 Public Data File from Crossref
copyright status
copyrighted
0 references
cites work
A Simple Model-Based Approach to Inferring and Visualizing Cancer Mutation Signatures
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5363805
retrieved
30 September 2017
Defining cell types and states with single-cell genomics
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5363805
retrieved
30 September 2017
A reanalysis of mouse ENCODE comparative gene expression data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5363805
retrieved
30 September 2017
Assessing the consistency of public human tissue RNA-seq data sets
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5363805
retrieved
30 September 2017
UNDO: a Bioconductor R package for unsupervised deconvolution of mixed gene expressions in tumor samples.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5363805
retrieved
30 September 2017
Massively parallel single-cell RNA-seq for marker-free decomposition of tissues into cell types
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5363805
retrieved
30 September 2017
The Genotype-Tissue Expression (GTEx) project
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5363805
retrieved
30 September 2017
DeMix: deconvolution for mixed cancer transcriptomes using raw measured data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5363805
retrieved
30 September 2017
PERT: a method for expression deconvolution of human blood samples from varied microenvironmental and developmental conditions
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5363805
retrieved
30 September 2017
The ConsensusPathDB interaction database: 2013 update
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5363805
retrieved
30 September 2017
Sparse Bayesian infinite factor models
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5363805
retrieved
30 September 2017
Using probabilistic estimation of expression residuals (PEER) to obtain increased power and interpretability of gene expression analyses
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5363805
retrieved
30 September 2017
From RNA-seq reads to differential expression results
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5363805
retrieved
30 September 2017
Analysis of population structure: a unifying framework and novel methods based on sparse factor analysis.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5363805
retrieved
30 September 2017
Evidence mining and novelty assessment of protein-protein interactions with the ConsensusPathDB plugin for Cytoscape
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5363805
retrieved
30 September 2017
Tackling the widespread and critical impact of batch effects in high-throughput data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5363805
retrieved
30 September 2017
Resolution of cell fate decisions revealed by single-cell gene expression analysis from zygote to blastocyst
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5363805
retrieved
30 September 2017
Cell type-specific gene expression differences in complex tissues
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5363805
retrieved
30 September 2017
Applying unmixing to gene expression data for tumor phylogeny inference
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5363805
retrieved
30 September 2017
Biomarker discovery in heterogeneous tissue samples -taking the in-silico deconfounding approach
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5363805
retrieved
30 September 2017
Smarcc1/Baf155 couples self-renewal gene repression with changes in chromatin structure in mouse embryonic stem cells
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5363805
retrieved
30 September 2017
A penalized matrix decomposition, with applications to sparse principal components and canonical correlation analysis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5363805
retrieved
30 September 2017
Gene expression during the oocyte-to-embryo transition in mammals
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5363805
retrieved
30 September 2017
mRNA-Seq whole-transcriptome analysis of a single cell
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5363805
retrieved
30 September 2017
Blastocyst lineage formation, early embryonic asymmetries and axis patterning in the mouse
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5363805
retrieved
30 September 2017
Interpreting principal component analyses of spatial population genetic variation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5363805
retrieved
30 September 2017
Capturing heterogeneity in gene expression studies by surrogate variable analysis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5363805
retrieved
30 September 2017
A systematic screen for genes expressed in definitive endoderm by Serial Analysis of Gene Expression (SAGE).
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5363805
retrieved
30 September 2017
Zscan4: a novel gene expressed exclusively in late 2-cell embryos and embryonic stem cells
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5363805
retrieved
30 September 2017
How does gene expression clustering work?
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5363805
retrieved
30 September 2017
Bioconductor: open software development for computational biology and bioinformatics
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5363805
retrieved
30 September 2017
Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5363805
retrieved
30 September 2017
Genetic structure of human populations
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5363805
retrieved
30 September 2017
Unstable kinetochore-microtubule capture and chromosomal instability following deletion of CENP-E
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5363805
retrieved
30 September 2017
Inference of population structure using multilocus genotype data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5363805
retrieved
30 September 2017
Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5363805
retrieved
30 September 2017
Molecular classification of cancer: class discovery and class prediction by gene expression monitoring
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5363805
retrieved
30 September 2017
Cluster analysis and display of genome-wide expression patterns
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5363805
retrieved
30 September 2017
GFAP gene expression during development of astrocyte
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5363805
retrieved
30 September 2017
Single-cell RNA-seq reveals dynamic, random monoallelic gene expression in mammalian cells
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5363805
retrieved
29 June 2018
Computational purification of individual tumor gene expression profiles leads to significant improvements in prognostic prediction
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5363805
retrieved
29 June 2018
Differential effects of myelin basic protein-activated Th1 and Th2 cells on the local immune microenvironment of injured spinal cord.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5363805
retrieved
22 September 2018
Role of Bcl2-like 10 (Bcl2l10) in Regulating Mouse Oocyte Maturation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5363805
retrieved
22 September 2018
Algorithms for selecting informative marker panels for population assignment.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5363805
retrieved
22 September 2018
ENC-1: a novel mammalian kelch-related gene specifically expressed in the nervous system encodes an actin-binding protein.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5363805
retrieved
22 September 2018
Cluster analysis for gene expression data: a survey
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1006599
retrieved
21 January 2018
Horseshoes in multidimensional scaling and local kernel methods
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1006599
retrieved
21 January 2018
Identifiers
DOI
10.1371/JOURNAL.PGEN.1006599
1 reference
stated in
Europe PubMed Central
PMC publication ID
5363805
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28333934%20AND%20SRC:MED&resulttype=core&format=json
retrieved
13 March 2020
PMC publication ID
5363805
1 reference
stated in
Europe PubMed Central
PMC publication ID
5363805
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28333934%20AND%20SRC:MED&resulttype=core&format=json
retrieved
13 March 2020
PubMed publication ID
28333934
1 reference
stated in
Europe PubMed Central
PMC publication ID
5363805
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28333934%20AND%20SRC:MED&resulttype=core&format=json
retrieved
13 March 2020
Sitelinks
Wikipedia
(0 entries)
edit
Wikibooks
(0 entries)
edit
Wikinews
(0 entries)
edit
Wikiquote
(0 entries)
edit
Wikisource
(0 entries)
edit
Wikiversity
(0 entries)
edit
Wikivoyage
(0 entries)
edit
Wiktionary
(0 entries)
edit
Multilingual sites
(0 entries)
edit
