(Q36327765)

13 August 2017

The metabolome regulates the epigenetic landscape during naive-to-primed human embryonic stem cell transition (English)

1 reference

human embryonic stem cell

13 August 2017

1 reference

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26571212%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

Yuliang Wang

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26571212%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

Jennifer Hesson

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26571212%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

Aaron M. Robitaille

17

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26571212%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

23

Adam A Margolin

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26571212%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

20

David Hockenbery

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26571212%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

19

Oliver Fiehn

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26571212%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

author name string

Julie Mathieu

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26571212%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

Amy Ferreccio

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26571212%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

Zhuojin Xu

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26571212%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

Karin A Fischer

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26571212%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

Arikketh Devi

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26571212%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

Damien Detraux

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26571212%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

Haiwei Gu

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26571212%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

Stephanie L Battle

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26571212%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

Megan Showalter

12

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26571212%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

Cristina Valensisi

13

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26571212%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

Jason H Bielas

14

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26571212%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

Nolan G Ericson

15

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26571212%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

Lilyana Margaretha

16

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26571212%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

Daciana Margineantu

18

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26571212%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

C Anthony Blau

21

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26571212%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

Daniel Raftery

22

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26571212%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

R David Hawkins

24

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26571212%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

Randall T Moon

25

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26571212%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

Carol B Ware

26

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26571212%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

Hannele Ruohola-Baker

27

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26571212%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

publication date

16 November 2015

1 reference

13 August 2017

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26571212%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

volume

17

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26571212%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

issue

12

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26571212%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

page(s)

1523-1535

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26571212%20AND%20SRC:MED&resulttype=core&format=json

describes a project that uses

7 June 2020

limma

1 reference

22 June 2022

https://europepmc.org/article/PMC/4662931

based on heuristic

inferred from PubMed Central ID database lookup

exact match

https://scigraph.springernature.com/pub.10.1038/ncb3264

0 references

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An alternative pluripotent state confers interspecies chimaeric competency

30 September 2017

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Intrinsic retroviral reactivation in human preimplantation embryos and pluripotent cells

30 September 2017

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Stem cell signaling. An integral program for tissue renewal and regeneration: Wnt signaling and stem cell control

30 September 2017

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30 September 2017

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Resetting transcription factor control circuitry toward ground-state pluripotency in human

30 September 2017

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Systematic identification of culture conditions for induction and maintenance of naive human pluripotency

30 September 2017

1 reference

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An iCRISPR platform for rapid, multiplexable, and inducible genome editing in human pluripotent stem cells

30 September 2017

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Epigenomic comparison reveals activation of "seed" enhancers during transition from naive to primed pluripotency

30 September 2017

1 reference

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miR-155 activates cytokine gene expression in Th17 cells by regulating the DNA-binding protein Jarid2 to relieve polycomb-mediated repression

30 September 2017

1 reference

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Nicotinamide N-methyltransferase knockdown protects against diet-induced obesity.

30 September 2017

1 reference

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The Role of the Leukemia Inhibitory Factor (LIF) - Pathway in Derivation and Maintenance of Murine Pluripotent Stem Cells

30 September 2017

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miRNA sensitivity to Drosha levels correlates with pre-miRNA secondary structure.

30 September 2017

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Platform for induction and maintenance of transgene-free hiPSCs resembling ground state pluripotent stem cells

30 September 2017

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Hypoxia-inducible factors have distinct and stage-specific roles during reprogramming of human cells to pluripotency.

30 September 2017

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Derivation of naive human embryonic stem cells.

30 September 2017

1 reference

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A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages

30 September 2017

1 reference

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Induction of a human pluripotent state with distinct regulatory circuitry that resembles preimplantation epiblast.

30 September 2017

1 reference

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Molecular mechanism of sphingosine-1-phosphate action in Duchenne muscular dystrophy

30 September 2017

1 reference

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Targeted enrichment and high-resolution digital profiling of mitochondrial DNA deletions in human brain

30 September 2017

1 reference

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LipidBlast in silico tandem mass spectrometry database for lipid identification

30 September 2017

1 reference

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Hypoxia induces re-entry of committed cells into pluripotency

30 September 2017

1 reference

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diffReps: detecting differential chromatin modification sites from ChIP-seq data with biological replicates

30 September 2017

1 reference

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NNMT promotes epigenetic remodeling in cancer by creating a metabolic methylation sink

30 September 2017

1 reference

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Energy metabolism and energy-sensing pathways in mammalian embryonic and adult stem cell fate

30 September 2017

1 reference

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Influence of threonine metabolism on S-adenosylmethionine and histone methylation

30 September 2017

1 reference

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STAR: ultrafast universal RNA-seq aligner

30 September 2017

1 reference

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Induced pluripotent stem cells show metabolomic differences to embryonic stem cells in polyunsaturated phosphatidylcholines and primary metabolism

30 September 2017

1 reference

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Endogenous Wnt signalling in human embryonic stem cells generates an equilibrium of distinct lineage-specified progenitors

30 September 2017

1 reference

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An integrated encyclopedia of DNA elements in the human genome

30 September 2017

1 reference

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The NIH Roadmap Epigenomics Program data resource

30 September 2017

1 reference

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The updated biology of hypoxia-inducible factor

30 September 2017

1 reference

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HIF1α induced switch from bivalent to exclusively glycolytic metabolism during ESC-to-EpiSC/hESC transition

30 September 2017

1 reference

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Wnt/β-catenin signaling promotes differentiation, not self-renewal, of human embryonic stem cells and is repressed by Oct4

30 September 2017

1 reference

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Assessment of hypoxia inducible factor levels in cancer cell lines upon hypoxic induction using a novel reporter construct

30 September 2017

1 reference

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UCP2 regulates energy metabolism and differentiation potential of human pluripotent stem cells.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4662931

The metabolome of induced pluripotent stem cells reveals metabolic changes occurring in somatic cell reprogramming

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4662931

An endogenous tumour-promoting ligand of the human aryl hydrocarbon receptor

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4662931

Embryonic stem cells require Wnt proteins to prevent differentiation to epiblast stem cells

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4662931

Somatic oxidative bioenergetics transitions into pluripotency-dependent glycolysis to facilitate nuclear reprogramming.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4662931

Energy metabolism in human pluripotent stem cells and their differentiated counterparts

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4662931

Modulation of mitochondrial biogenesis and bioenergetic metabolism upon in vitro and in vivo differentiation of human ES and iPS cells

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4662931

Differential expression analysis for sequence count data

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4662931

The NIH Roadmap Epigenomics Mapping Consortium

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4662931

O2 regulates stem cells through Wnt/β-catenin signalling.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4662931

A framework for oligonucleotide microarray preprocessing.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4662931

Genetic evidence for high-altitude adaptation in Tibet

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4662931

Metabolic oxidation regulates embryonic stem cell differentiation

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4662931

Transcription-based reporters of Wnt/beta-catenin signaling

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4662931

Characterization of microRNAs involved in embryonic stem cell states

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4662931

FiehnLib: Mass Spectral and Retention Index Libraries for Metabolomics Based on Quadrupole and Time-of-Flight Gas Chromatography/Mass Spectrometry

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4662931

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4662931

Stat3 up-regulates expression of nicotinamide N-methyltransferase in human cancer cells

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4662931

Derivation of pluripotent epiblast stem cells from mammalian embryos

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4662931

New cell lines from mouse epiblast share defining features with human embryonic stem cells

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4662931

The brain-specific carnitine palmitoyltransferase-1c regulates energy homeostasis

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4662931

Adjusting batch effects in microarray expression data using empirical Bayes methods

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4662931

affy--analysis of Affymetrix GeneChip data at the probe level

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4662931

Exploration, normalization, and summaries of high density oligonucleotide array probe level data

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4662931

HIF prolyl-hydroxylase 2 is the key oxygen sensor setting low steady-state levels of HIF-1alpha in normoxia

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4662931

The product of the murine homolog of the Drosophila extra sex combs gene displays transcriptional repressor activity

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4662931

Reorganization of enhancer patterns in transition from naive to primed pluripotency

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4662931

Alternative Routes to Induce Naïve Pluripotency in Human Embryonic Stem Cells

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4662931

Single-cell RNA-Seq profiling of human preimplantation embryos and embryonic stem cells

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4662931

Carbon metabolism-mediated myogenic differentiation

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4662931

Methionine metabolism regulates maintenance and differentiation of human pluripotent stem cells.

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4662931

Derivation of novel human ground state naive pluripotent stem cells

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4662931

Inactive yet indispensable: the tale of Jarid2.

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4662931

Histone lysine demethylases and their impact on epigenetics.

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4662931

Transactivation of vimentin by beta-catenin in human breast cancer cells.

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4662931

Systematic Identification of Culture Conditions for Induction and Maintenance of Naive Human Pluripotency.

22 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNCB3264

Haploview: Visualization and analysis of SNP genotype data

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNCB3264

21 January 2018

Identifiers

DOI

10.1038/NCB3264

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26571212%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

7 June 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26571212%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

PubMed publication ID

26571212

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26571212%20AND%20SRC:MED&resulttype=core&format=json