(Q36329458)

13 August 2017

SILVA, RDP, Greengenes, NCBI and OTT - how do these taxonomies compare? (English)

1 reference

SILVA ribosomal RNA database

13 August 2017

0 references

0 references

Open Tree of Life reference taxonomy

0 references

Taxonomy database of the U.S. National Center for Biotechnology Information

0 references

author name string

Monika Balvočiūtė

series ordinal

1

1 reference

13 August 2017

Daniel H Huson

series ordinal

2

1 reference

13 August 2017

language of work or name

English

0 references

publication date

14 March 2017

1 reference

13 August 2017

1 reference

13 August 2017

18

1 reference

13 August 2017

114

1 reference

13 August 2017

Suppl 2

1 reference

https://scigraph.springernature.com/pub.10.1186/s12864-017-3501-4

13 August 2017

0 references

cites work

MEGAN Community Edition - Interactive Exploration and Analysis of Large-Scale Microbiome Sequencing Data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5374703

The International Nucleotide Sequence Database Collaboration

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5374703

Microbial malaise: how can we classify the microbiome?

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5374703

Synthesis of phylogeny and taxonomy into a comprehensive tree of life

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5374703

The Encyclopedia of Life v2: Providing Global Access to Knowledge About Life on Earth

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5374703

The SILVA and "All-species Living Tree Project (LTP)" taxonomic frameworks

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5374703

Ribosomal Database Project: data and tools for high throughput rRNA analysis

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5374703

LPSN--list of prokaryotic names with standing in nomenclature

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5374703

The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5374703

The Revised Classification of Eukaryotes

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5374703

The NCBI Taxonomy database

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5374703

An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5374703

QIIME allows analysis of high-throughput community sequencing data

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5374703

FastTree: computing large minimum evolution trees with profiles instead of a distance matrix

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5374703

Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5374703

The New Higher Level Classification of Eukaryotes with Emphasis on the Taxonomy of Protists

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5374703

SINA: accurate high-throughput multiple sequence alignment of ribosomal RNA genes.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5374703

10.1186/S12864-017-3501-4

22 September 2018

Identifiers

DOI

1 reference

Dimensions Publication ID

13 August 2017

0 references

1 reference

13 August 2017

1 reference