(Q36344543)

13 August 2017

ABC: a tool to identify SNVs causing allele-specific transcription factor binding from ChIP-Seq experiments (English)

1 reference

13 August 2017

3

Benjamin Haibe-Kains

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Mathieu Lupien

object named as

Mathieu Lupien

series ordinal

4

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author name string

Swneke D Bailey

series ordinal

1

1 reference

13 August 2017

Carl Virtanen

series ordinal

2

1 reference

13 August 2017

language of work or name

English

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publication date

20 May 2015

1 reference

13 August 2017

1 reference

13 August 2017

31

1 reference

13 August 2017

18

1 reference

13 August 2017

3057-3059

1 reference

ZNF143 provides sequence specificity to secure chromatin interactions at gene promoters

13 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4668780

Laying a solid foundation for Manhattan--'setting the functional basis for the post-GWAS era'.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4668780

Highly recurrent TERT promoter mutations in human melanoma

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4668780

TERT promoter mutations in familial and sporadic melanoma

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4668780

ChIP-seq and beyond: new and improved methodologies to detect and characterize protein-DNA interactions

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4668780

Breast cancer risk-associated SNPs modulate the affinity of chromatin for FOXA1 and alter gene expression

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4668780

Linking disease associations with regulatory information in the human genome

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4668780

An integrated encyclopedia of DNA elements in the human genome

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4668780

Simultaneous SNP identification and assessment of allele-specific bias from ChIP-seq data

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4668780

Effects of sequence variation on differential allelic transcription factor occupancy and gene expression

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4668780

Differential oestrogen receptor binding is associated with clinical outcome in breast cancer

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4668780

AlleleSeq: analysis of allele-specific expression and binding in a network framework

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4668780

FOXA1 is a key determinant of estrogen receptor function and endocrine response

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4668780

Effect of read-mapping biases on detecting allele-specific expression from RNA-sequencing data

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4668780

ChIP-seq: advantages and challenges of a maturing technology

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4668780

The Sequence Alignment/Map format and SAMtools

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4668780

Potential etiologic and functional implications of genome-wide association loci for human diseases and traits

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4668780

ALEA: a toolbox for allele-specific epigenomics analysis

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4668780

10.1093/BIOINFORMATICS/BTV321

29 June 2018

Identifiers

DOI

1 reference

journals/bioinformatics/BaileyVHL15

13 August 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

13 August 2017

PubMed publication ID

25995231

1 reference