Home
Random
Nearby
Log in
Settings
Donate
About Wikidata
Disclaimers
Search
(Q36365208)
Watch
English
Genome-Wide Scan for Adaptive Divergence and Association with Population-Specific Covariates
scientific article
In more languages
edit
Statements
instance of
scholarly article
1 reference
stated in
Europe PubMed Central
PMCID
4676524
retrieved
13 August 2017
title
Genome-Wide Scan for Adaptive Divergence and Association with Population-Specific Covariates
(English)
1 reference
stated in
Europe PubMed Central
PMCID
4676524
retrieved
13 August 2017
main subject
genome-wide association study
0 references
covariate
1 reference
based on heuristic
inferred from title
author name string
Mathieu Gautier
series ordinal
1
1 reference
stated in
Europe PubMed Central
PMCID
4676524
retrieved
13 August 2017
language of work or name
English
0 references
publication date
19 October 2015
1 reference
stated in
Europe PubMed Central
PMCID
4676524
retrieved
13 August 2017
published in
Genetics
1 reference
stated in
Europe PubMed Central
PMCID
4676524
retrieved
13 August 2017
volume
201
1 reference
stated in
Europe PubMed Central
PMCID
4676524
retrieved
13 August 2017
issue
4
1 reference
stated in
Europe PubMed Central
PMCID
4676524
retrieved
13 August 2017
page(s)
1555-1579
1 reference
stated in
Europe PubMed Central
PMCID
4676524
retrieved
13 August 2017
cites work
An interpretive review of selective sweep studies in Bos taurus cattle populations: identification of unique and shared selection signals across breeds
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4676524
retrieved
30 September 2017
Genomic signatures reveal new evidences for selection of important traits in domestic cattle.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4676524
retrieved
30 September 2017
Widespread signals of convergent adaptation to high altitude in Asia and america
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4676524
retrieved
30 September 2017
Sequencing pools of individuals — mining genome-wide polymorphism data without big funding
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4676524
retrieved
30 September 2017
Do the same genes underlie parallel phenotypic divergence in different Littorina saxatilis populations?
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4676524
retrieved
30 September 2017
Genome scans for detecting footprints of local adaptation using a Bayesian factor model.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4676524
retrieved
30 September 2017
A molecular basis for classic blond hair color in Europeans
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4676524
retrieved
30 September 2017
Using genotyping data to assign markers to their chromosome type and to infer the sex of individuals: a Bayesian model-based classifier
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4676524
retrieved
30 September 2017
Classic selective sweeps revealed by massive sequencing in cattle
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4676524
retrieved
30 September 2017
Detecting and measuring selection from gene frequency data.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4676524
retrieved
30 September 2017
Detecting natural selection in genomic data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4676524
retrieved
30 September 2017
Estimation of population allele frequencies from next-generation sequencing data: pool-versus individual-based genotyping.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4676524
retrieved
30 September 2017
Efficient moment-based inference of admixture parameters and sources of gene flow
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4676524
retrieved
30 September 2017
Testing for associations between loci and environmental gradients using latent factor mixed models.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4676524
retrieved
30 September 2017
Q(ST)-F(ST) comparisons: evolutionary and ecological insights from genomic heterogeneity.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4676524
retrieved
30 September 2017
Detecting signatures of selection through haplotype differentiation among hierarchically structured populations
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4676524
retrieved
30 September 2017
Inference of population splits and mixtures from genome-wide allele frequency data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4676524
retrieved
30 September 2017
Voltage-dependent anion channels are a key factor of male fertility
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4676524
retrieved
30 September 2017
A critical assessment of storytelling: gene ontology categories and the importance of validating genomic scans.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4676524
retrieved
30 September 2017
A genome-wide association study reveals loci influencing height and other conformation traits in horses
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4676524
retrieved
30 September 2017
A complex genomic rearrangement involving the endothelin 3 locus causes dermal hyperpigmentation in the chicken
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4676524
retrieved
30 September 2017
Genome-wide genetic marker discovery and genotyping using next-generation sequencing
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4676524
retrieved
30 September 2017
Adaptations to climate-mediated selective pressures in humans
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4676524
retrieved
30 September 2017
Variants modulating the expression of a chromosome domain encompassing PLAG1 influence bovine stature.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4676524
retrieved
30 September 2017
Mutations in the myostatin gene leading to hypermuscularity in mammals: indications for a similar mechanism in fish?
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4676524
retrieved
30 September 2017
Insights into the genetic history of French cattle from dense SNP data on 47 worldwide breeds
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4676524
retrieved
30 September 2017
Genetic architecture of complex traits and accuracy of genomic prediction: coat colour, milk-fat percentage, and type in Holstein cattle as contrasting model traits
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4676524
retrieved
30 September 2017
Hundreds of variants clustered in genomic loci and biological pathways affect human height
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4676524
retrieved
30 September 2017
Detecting selection in population trees: the Lewontin and Krakauer test extended
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4676524
retrieved
30 September 2017
A Bayesian outlier criterion to detect SNPs under selection in large data sets
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4676524
retrieved
30 September 2017
Using environmental correlations to identify loci underlying local adaptation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4676524
retrieved
30 September 2017
The genetics of human adaptation: hard sweeps, soft sweeps, and polygenic adaptation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4676524
retrieved
30 September 2017
Roles of endothelin signaling in melanocyte development and melanoma
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4676524
retrieved
30 September 2017
Genome-wide scans for footprints of natural selection
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4676524
retrieved
30 September 2017
A whole genome Bayesian scan for adaptive genetic divergence in West African cattle
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4676524
retrieved
30 September 2017
The genome response to artificial selection: a case study in dairy cattle
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4676524
retrieved
30 September 2017
A Bayesian hierarchical model for analysis of SNP diversity in multilocus, multipopulation samples
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4676524
retrieved
30 September 2017
Bos taurus genome assembly
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4676524
retrieved
30 September 2017
A genome-scan method to identify selected loci appropriate for both dominant and codominant markers: a Bayesian perspective
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4676524
retrieved
30 September 2017
"Reverse ecology" and the power of population genomics
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4676524
retrieved
30 September 2017
Adaptations to climate in candidate genes for common metabolic disorders
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4676524
retrieved
30 September 2017
Bayesian variable selection for detecting adaptive genomic differences among populations
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4676524
retrieved
30 September 2017
Biology of epidermal and hair pigmentation in cattle: a mini-review
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4676524
retrieved
30 September 2017
A spatial analysis method (SAM) to detect candidate loci for selection: towards a landscape genomics approach to adaptation.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4676524
retrieved
30 September 2017
Adaptation and speciation: what can F(st) tell us?
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4676524
retrieved
30 September 2017
Measures of human population structure show heterogeneity among genomic regions
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4676524
retrieved
30 September 2017
simuPOP: a forward-time population genetics simulation environment
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4676524
retrieved
30 September 2017
APE: Analyses of Phylogenetics and Evolution in R language
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4676524
retrieved
30 September 2017
The color loci of mice--a genetic century
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4676524
retrieved
30 September 2017
Interrogating a high-density SNP map for signatures of natural selection
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4676524
retrieved
30 September 2017
A missense mutation in the bovine MGF gene is associated with the roan phenotype in Belgian Blue and Shorthorn cattle
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4676524
retrieved
30 September 2017
A deletion in the bovine myostatin gene causes the double-muscled phenotype in cattle
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4676524
retrieved
30 September 2017
A method for quantifying differentiation between populations at multi-allelic loci and its implications for investigating identity and paternity
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4676524
retrieved
30 September 2017
Robust identification of local adaptation from allele frequencies
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4676524
retrieved
28 June 2018
Bayesian analysis of molecular variance in pyrosequences quantifies population genetic structure across the genome of Lycaeides butterflies
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4676524
retrieved
28 June 2018
Detecting loci under selection in a hierarchically structured population
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4676524
retrieved
28 June 2018
A worldwide survey of haplotype variation and linkage disequilibrium in the human genome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4676524
retrieved
28 June 2018
Interpretation of variation across marker loci as evidence of selection.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4676524
retrieved
28 June 2018
Distribution of gene frequency as a test of the theory of the selective neutrality of polymorphisms
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4676524
retrieved
28 June 2018
Genome scan methods against more complex models: when and how much should we trust them?
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4676524
retrieved
22 September 2018
Detecting selection along environmental gradients: analysis of eight methods and their effectiveness for outbreeding and selfing populations
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4676524
retrieved
22 September 2018
The genetic determination of skin pigmentation: KITLG and the KITLG/c-Kit pathway as key players in the onset of human familial pigmentary diseases.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4676524
retrieved
22 September 2018
Polymorphic regions affecting human height also control stature in cattle.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4676524
retrieved
22 September 2018
Tracking genes of ecological relevance using a genome scan in two independent regional population samples of Arabis alpina.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4676524
retrieved
22 September 2018
Identifying adaptive genetic divergence among populations from genome scans.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4676524
retrieved
22 September 2018
Population structure and human evolution
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4676524
retrieved
22 September 2018
Identifiers
DOI
10.1534/GENETICS.115.181453
1 reference
stated in
Europe PubMed Central
PMCID
4676524
retrieved
13 August 2017
PMCID
4676524
1 reference
stated in
Europe PubMed Central
PMCID
4676524
retrieved
13 August 2017
PubMed ID
26482796
1 reference
stated in
Europe PubMed Central
PMCID
4676524
retrieved
13 August 2017
Sitelinks
Wikipedia
(0 entries)
edit
Wikibooks
(0 entries)
edit
Wikinews
(0 entries)
edit
Wikiquote
(0 entries)
edit
Wikisource
(0 entries)
edit
Wikiversity
(0 entries)
edit
Wikivoyage
(0 entries)
edit
Wiktionary
(0 entries)
edit
Multilingual sites
(0 entries)
edit