(Q36445767)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15572347%20AND%20SRC:MED&resulttype=core&format=json

5 January 2020

title

On the importance of atomic fluctuations, protein flexibility, and solvent in ion permeation (English)

1 reference

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5 January 2020

1

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5 January 2020

author name string

O S Andersen

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15572347%20AND%20SRC:MED&resulttype=core&format=json

5 January 2020

Benoit Roux

series ordinal

3

1 reference

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5 January 2020

publication date

1 December 2004

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15572347%20AND%20SRC:MED&resulttype=core&format=json

The Journal of General Physiology

5 January 2020

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15572347%20AND%20SRC:MED&resulttype=core&format=json

5 January 2020

volume

124

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15572347%20AND%20SRC:MED&resulttype=core&format=json

5 January 2020

issue

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15572347%20AND%20SRC:MED&resulttype=core&format=json

5 January 2020

page(s)

679-690

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15572347%20AND%20SRC:MED&resulttype=core&format=json

All-atom empirical potential for molecular modeling and dynamics studies of proteins

5 January 2020

cites work

1 reference

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Theoretical and computational models of biological ion channels

30 September 2017

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Control of ion selectivity in potassium channels by electrostatic and dynamic properties of carbonyl ligands.

30 September 2017

1 reference

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Ionic permeation free energy in gramicidin: a semimicroscopic perspective

30 September 2017

1 reference

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Energetics of ion conduction through the gramicidin channel

30 September 2017

1 reference

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An Analysis of Pore Size in Excitable Membranes

30 September 2017

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Structure of gramicidin a in a lipid bilayer environment determined using molecular dynamics simulations and solid-state NMR data

30 September 2017

1 reference

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A microscopic view of ion conduction through the K+ channel.

30 September 2017

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The role of the dielectric barrier in narrow biological channels: a novel composite approach to modeling single-channel currents

30 September 2017

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Dielectric self-energy in Poisson-Boltzmann and Poisson-Nernst-Planck models of ion channels

30 September 2017

1 reference

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Role of the dielectric constants of membrane proteins and channel water in ion permeation

30 September 2017

1 reference

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Protein dynamics studied by neutron scattering.

30 September 2017

1 reference

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The voltage-gated potassium channels and their relatives

30 September 2017

1 reference

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Continuum electrostatics fails to describe ion permeation in the gramicidin channel

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2234034

Computational studies of the gramicidin channel

30 September 2017

1 reference

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The ionization state and the conformation of Glu-71 in the KcsA K(+) channel

30 September 2017

1 reference

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Chemistry of ion coordination and hydration revealed by a K+ channel-Fab complex at 2.0 A resolution

30 September 2017

1 reference

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Hierarchical approach to predicting permeation in ion channels

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2234034

Structures of gramicidins A, B, and C incorporated into sodium dodecyl sulfate micelles

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2234034

What are the dielectric "constants" of proteins and how to validate electrostatic models?

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2234034

Dielectric properties of proteins from simulation: the effects of solvent, ligands, pH, and temperature

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2234034

How soft is a protein? A protein dynamics force constant measured by neutron scattering.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2234034

Molecular dynamics of the KcsA K(+) channel in a bilayer membrane

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2234034

Ion permeation mechanism of the potassium channel

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2234034

Simulations of ion permeation through a potassium channel: molecular dynamics of KcsA in a phospholipid bilayer

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2234034

Ion channels: from idea to reality

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2234034

Potassium-dependent changes in the conformation of the Kv2.1 potassium channel pore

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2234034

A lattice relaxation algorithm for three-dimensional Poisson-Nernst-Planck theory with application to ion transport through the gramicidin A channel.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2234034

The Structure of the Potassium Channel: Molecular Basis of K+ Conduction and Selectivity

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2234034

High-resolution polypeptide structure in a lamellar phase lipid environment from solid state NMR derived orientational constraints

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2234034

Engineering the gramicidin channel

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2234034

Role of hydration and water structure in biological and colloidal interactions

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2234034

The use of physical methods in determining gramicidin channel structure and function

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2234034

Correlations between function and dynamics: time scale coincidence for ion translocation and molecular dynamics in the gramicidin channel backbone

30 September 2017

1 reference

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The internal dynamics of globular proteins.

30 September 2017

1 reference

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Dynamical theory of activated processes in globular proteins

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2234034

A consistent picture of protein dynamics

30 September 2017

1 reference

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Structure and dynamics of ion transport through gramicidin A.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2234034

Ionic selectivity revisited: The role of kinetic and equilibrium processes in ion permeation through channels

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2234034

The permeability of the sodium channel to metal cations in myelinated nerve

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2234034

Potassium channels in myelinated nerve. Selective permeability to small cations

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2234034

Where metal ions bind in proteins

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2234034

Molecular dynamics simulations in biology

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2234034

Ion transport in a model gramicidin channel. Structure and thermodynamics

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2234034

Molecular determinants of channel function

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2234034

Thermodynamic fluctuations in protein molecules

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2234034

Temperature-dependent X-ray diffraction as a probe of protein structural dynamics

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2234034

Water permeability of gramicidin A-treated lipid bilayer membranes

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2234034

Binding of kappa-conotoxin PVIIA to Shaker K+ channels reveals different K+ and Rb+ occupancies within the ion channel pore

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2234034

Distinction between dipolar and inductive effects in modulating the conductance of gramicidin channels

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2234034

Brownian dynamics study of an open-state KcsA potassium channel.

28 June 2018

1 reference

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Energetics of ion conduction through the K+ channel

21 January 2018

1 reference

https://api.crossref.org/works/10.1085%2FJGP.200409111

CHARMM: A program for macromolecular energy, minimization, and dynamics calculations

21 January 2018

1 reference

https://api.crossref.org/works/10.1085%2FJGP.200409111

Simulations of ion current in realistic models of ion channels: the KcsA potassium channel

21 January 2018

1 reference

https://api.crossref.org/works/10.1085%2FJGP.200409111

The permeability of the sodium channel to organic cations in myelinated nerve

21 January 2018

1 reference

https://api.crossref.org/works/10.1085%2FJGP.200409111

Ion permeation and selectivity of OmpF porin: a theoretical study based on molecular dynamics, Brownian dynamics, and continuum electrodiffusion theory.

21 January 2018

1 reference

https://api.crossref.org/works/10.1085%2FJGP.200409111

Dielectric boundary force and its crucial role in gramicidin.

21 January 2018

1 reference

https://api.crossref.org/works/10.1085%2FJGP.200409111

A set of van der Waals and coulombic radii of protein atoms for molecular and solvent-accessible surface calculation, packing evaluation, and docking

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2234034

Dielectric behaviour of dry synthetic polypeptides

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2234034

Structure of myoglobin refined at 2-0 A resolution. I. Crystallographic refinement of metmyoglobin from sperm whale

21 October 2018

1 reference

12 December 2020

Structure, energetics, and dynamics of lipid-protein interactions: A molecular dynamics study of the gramicidin A channel in a DMPC bilayer

1 reference

12 December 2020

An x-ray study of azide methaemoglobin

1 reference

12 December 2020

Lipid-peptide interface: valine conformation and dynamics in the gramicidin channel

1 reference

12 December 2020

Potassium and sodium binding to the outer mouth of the K+ channel

1 reference

12 December 2020

Study of protein dynamics by X-ray diffraction

1 reference

12 December 2020

Electronic charge distribution in crystalline diamond, silicon, and germanium

1 reference

12 December 2020

Dynamics of ligand binding to heme proteins

1 reference

12 December 2020

Monovalent cation transport: lack of structural deformation upon cation binding

1 reference

12 December 2020

Identifiers

DOI

10.1085/JGP.200409111

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15572347%20AND%20SRC:MED&resulttype=core&format=json

5 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15572347%20AND%20SRC:MED&resulttype=core&format=json

5 January 2020

PubMed publication ID

15572347

1 reference