(Q34181406)

31 July 2017

title

The role of the dielectric barrier in narrow biological channels: a novel composite approach to modeling single-channel currents (English)

1 reference

31 July 2017

3

Abraham Nitzan

1 reference

31 July 2017

Artem B Mamonov

1

1 reference

31 July 2017

Rob D Coalson

series ordinal

2

1 reference

31 July 2017

Maria G Kurnikova

series ordinal

4

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31 July 2017

language of work or name

English

0 references

publication date

1 June 2003

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31 July 2017

number of pages

16

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based on heuristic

inferred from page(s)

published in

Biophysical Journal

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31 July 2017

volume

84

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31 July 2017

issue

6

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31 July 2017

page(s)

3646-3661

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Theoretical and computational models of ion channels

31 July 2017

cites work

1 reference

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Simulation approaches to ion channel structure-function relationships

5 July 2018

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5 July 2018

Cardiac channelopathies

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Bacterial ion channels and their eukaryotic homologues.

5 July 2018

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Model channel ion currents in NaCl-extended simple point charge water solution with applied-field molecular dynamics

5 July 2018

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Hierarchical approach to predicting permeation in ion channels

5 July 2018

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Ion channels and their functional role in vascular endothelium

5 July 2018

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Ion channels and epilepsy

5 July 2018

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What are the dielectric "constants" of proteins and how to validate electrostatic models?

5 July 2018

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Mechanisms of permeation and selectivity in calcium channels

5 July 2018

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Calculating structures and free energies of complex molecules: combining molecular mechanics and continuum models

5 July 2018

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Ion channels, permeation, and electrostatics: insight into the function of KcsA.

5 July 2018

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A Grand Canonical Monte Carlo-Brownian dynamics algorithm for simulating ion channels

5 July 2018

1 reference

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Three-dimensional Poisson-Nernst-Planck theory studies: influence of membrane electrostatics on gramicidin A channel conductance

5 July 2018

1 reference

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Molecular dynamics of the KcsA K(+) channel in a bilayer membrane

5 July 2018

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Tests of continuum theories as models of ion channels. II. Poisson-Nernst-Planck theory versus brownian dynamics

5 July 2018

1 reference

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Permeation of ions across the potassium channel: Brownian dynamics studies

5 July 2018

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Ion channels: from idea to reality

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302949

From structure to function in open ionic channels

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302949

The cavity and pore helices in the KcsA K+ channel: electrostatic stabilization of monovalent cations.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302949

A lattice relaxation algorithm for three-dimensional Poisson-Nernst-Planck theory with application to ion transport through the gramicidin A channel.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302949

Exploration of the structural features defining the conduction properties of a synthetic ion channel

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302949

Noncontact dipole effects on channel permeation. I. Experiments with (5F-indole)Trp13 gramicidin A channels

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302949

The Structure of the Potassium Channel: Molecular Basis of K+ Conduction and Selectivity

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302949

The binding site of sodium in the gramicidin A channel: comparison of molecular dynamics with solid-state NMR data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302949

A semi-microscopic Monte Carlo study of permeation energetics in a gramicidin-like channel: the origin of cation selectivity

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302949

Flux, coupling, and selectivity in ionic channels of one conformation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302949

Charges, currents, and potentials in ionic channels of one conformation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302949

Sodium in gramicidin: an example of a permion

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302949

Influence of a channel-forming peptide on energy barriers to ion permeation, viewed from a continuum dielectric perspective

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302949

Structure and dynamics of ion transport through gramicidin A.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302949

Calculations of electrostatic interactions in biological systems and in solutions

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302949

Energetics of ion permeation through membrane channels. Solvation of Na+ by gramicidin A.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302949

Electrostatic interactions in macromolecules: theory and applications

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302949

Theoretical perspectives on ion-channel electrostatics: continuum and microscopic approaches

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302949

Molecular determinants of channel function

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302949

Simulations of ion current in realistic models of ion channels: the KcsA potassium channel

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302949

Derivation of Poisson and Nernst-Planck equations in a bath and channel from a molecular model.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302949

ES/IS: estimation of conformational free energy by combining dynamics simulations with explicit solvent with an implicit solvent continuum model.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302949

The dielectric constant of a folded protein

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302949

Focusing of electric fields in the active site of Cu-Zn superoxide dismutase: effects of ionic strength and amino-acid modification

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302949

A Second Generation Force Field for the Simulation of Proteins, Nucleic Acids, and Organic Molecules

28 October 2018

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2803%2975095-4

Molecular dynamics simulation of continuous current flow through a model biological membrane channel

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2803%2975095-4

Family of G protein alpha chains: amphipathic analysis and predicted structure of functional domains

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2803%2975095-4

Effective diffusion coefficients of K+ and Cl- ions in ion channel models

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2803%2975095-4

Molecular dynamics simulations of the gramicidin A-dimyristoylphosphatidylcholine system with an ion in the channel pore region

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2803%2975095-4

10.1016/S0006-3495(03)75095-4

7 January 2021

Identifiers

DOI

1 reference

31 July 2017

1 reference

31 July 2017

1 reference