(Q36476809)

14 August 2017

Lessons from the design of a novel atomic potential for protein folding (English)

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14 August 2017

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Eugene I. Shakhnovich

series ordinal

2

object named as

Eugene I Shakhnovich

1 reference

14 August 2017

William W Chen

1

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14 August 2017

1 July 2005

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14 August 2017

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14 August 2017

14

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14 August 2017

7

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14 August 2017

1741-1752

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Development of novel statistical potentials for protein fold recognition

14 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2253347

Distance-scaled, finite ideal-gas reference state improves structure-derived potentials of mean force for structure selection and stability prediction

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2253347

The ensemble folding kinetics of protein G from an all-atom Monte Carlo simulation

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2253347

A structure-based method for derivation of all-atom potentials for protein folding

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2253347

A distance-dependent atomic knowledge-based potential for improved protein structure selection.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2253347

A Gaussian statistical mechanical model for the equilibrium thermodynamics of barnase folding

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2253347

Pathways to a protein folding intermediate observed in a 1-microsecond simulation in aqueous solution

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2253347

Derivation and testing of pair potentials for protein folding. When is the quasichemical approximation correct?

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2253347

How to derive a protein folding potential? A new approach to an old problem

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2253347

Energy functions that discriminate X-ray and near native folds from well-constructed decoys

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2253347

Correlation between knowledge-based and detailed atomic potentials: application to the unfolding of the GCN4 leucine zipper

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2253347

Native atom types for knowledge-based potentials: application to binding energy prediction

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2253347

Can a pairwise contact potential stabilize native protein folds against decoys obtained by threading?

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2253347

Studies on the gross structure, cross-linkages, and terminal sequences in ribonuclease

21 September 2018

1 reference

12 December 2020

Distance-dependent, pair potential for protein folding: results from linear optimization

1 reference

12 December 2020

Formation of unique structure in polypeptide chains. Theoretical investigation with the aid of a replica approach

1 reference

12 December 2020

Derivation of protein-specific pair potentials based on weak sequence fragment similarity

1 reference

12 December 2020

Identifiers

DOI

10.1110/PS.051440705

1 reference

14 August 2017

1 reference

PMC publication ID

2253347

14 August 2017

PubMed publication ID

15987903

1 reference

PMC publication ID

2253347