(Q36478051)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22904078%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

title

Compression of next-generation sequencing reads aided by highly efficient de novo assembly (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22904078%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

2

1 reference

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11 February 2020

4

Michael G Katze

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22904078%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

author name string

Daniel C Jones

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22904078%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

Xinxia Peng

series ordinal

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22904078%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

language of work or name

English

0 references

publication date

16 August 2012

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22904078%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

published in

Nucleic Acids Research

1 reference

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11 February 2020

volume

40

1 reference

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11 February 2020

issue

22

1 reference

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11 February 2020

page(s)

e171

1 reference

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Creative Commons Attribution-NonCommercial 3.0 Unported

11 February 2020

copyright license

start time

5 October 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

Scaling metagenome sequence assembly with probabilistic de Bruijn graphs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3526293

Large-scale compression of genomic sequence databases with the Burrows-Wheeler transform.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3526293

Genome-wide Runx2 occupancy in prostate cancer cells suggests a role in regulating secretion

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3526293

Transformations for the compression of FASTQ quality scores of next-generation sequencing data

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3526293

Efficient de novo assembly of large genomes using compressed data structures

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3526293

Parallelized short read assembly of large genomes using de Bruijn graphs

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3526293

Efficient counting of k-mers in DNA sequences using a bloom filter

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3526293

Compressing genomic sequence fragments using SlimGene

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3526293

Efficient storage of high throughput DNA sequencing data using reference-based compression

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3526293

Succinct data structures for assembling large genomes

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3526293

The sequence read archive

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3526293

A map of human genome variation from population-scale sequencing

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3526293

G-SQZ: compact encoding of genomic sequence and quality data

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3526293

AMD biofilms: using model communities to study microbial evolution and ecological complexity in nature.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3526293

Fast and SNP-tolerant detection of complex variants and splicing in short reads

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3526293

The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3526293

The Sequence Alignment/Map format and SAMtools

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3526293

ABySS: a parallel assembler for short read sequence data

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3526293

Human genomes as email attachments

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3526293

An Eulerian path approach to DNA fragment assembly

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3526293

Compression of DNA sequence reads in FASTQ format.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3526293

Detection of redundant fusion transcripts as biomarkers or disease-specific therapeutic targets in breast cancer.

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3526293

21 September 2018

Identifiers

DOI

10.1093/NAR/GKS754

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22904078%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22904078%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

PubMed publication ID

22904078

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22904078%20AND%20SRC:MED&resulttype=core&format=json