(Q36494059)

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Whole genome sequence comparisons and "full-length" cDNA sequences: a combined approach to evaluate and improve Arabidopsis genome annotation

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scholarly article

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Europe PubMed Central

14 August 2017

Whole genome sequence comparisons and "full-length" cDNA sequences: a combined approach to evaluate and improve Arabidopsis genome annotation (English)

1 reference

Europe PubMed Central

14 August 2017

genome annotation

1 reference

based on heuristic

inferred from title

Francis Quétier

8

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Europe PubMed Central

14 August 2017

7

object named as

Corinne Cruaud

1 reference

Europe PubMed Central

14 August 2017

Jean Weissenbach

13

object named as

Jean Weissenbach

1 reference

Europe PubMed Central

14 August 2017

Olivier Jaillon

3

object named as

Olivier Jaillon

1 reference

Europe PubMed Central

14 August 2017

Patrick Wincker

4

object named as

Patrick Wincker

1 reference

Europe PubMed Central

14 August 2017

Christian Clepet

5

object named as

Christian Clepet

1 reference

Europe PubMed Central

14 August 2017

Vincent Schachter

10

object named as

Vincent Schächter

1 reference

Europe PubMed Central

14 August 2017

Vanina Castelli

1

object named as

Vanina Castelli

1 reference

Europe PubMed Central

14 August 2017

Claude Scarpelli

9

object named as

Claude Scarpelli

1 reference

Europe PubMed Central

14 August 2017

2

object named as

Jean-Marc Aury

1 reference

Europe PubMed Central

14 August 2017

author name string

Manuella Menard

6

1 reference

Europe PubMed Central

14 August 2017

Gary Temple

11

1 reference

Europe PubMed Central

14 August 2017

Michel Caboche

12

1 reference

Europe PubMed Central

14 August 2017

Marcel Salanoubat

14

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Europe PubMed Central

14 August 2017

language of work or name

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based on heuristic

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publication date

1 March 2004

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Europe PubMed Central

14 August 2017

Genome Research

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Europe PubMed Central

14 August 2017

14

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Europe PubMed Central

14 August 2017

406-413

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Europe PubMed Central

14 August 2017

3

1 reference

Europe PubMed Central

14 August 2017

Empirical analysis of transcriptional activity in the Arabidopsis genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=353228

30 September 2017

Alternative splicing and proteome diversity in plants: the tip of the iceberg has just emerged

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=353228

30 September 2017

Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=353228

30 September 2017

Assessing the Drosophila melanogaster and Anopheles gambiae genome annotations using genome-wide sequence comparisons

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=353228

30 September 2017

Comparison of rice and Arabidopsis annotation.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=353228

30 September 2017

Systematic discovery of new genes in the Saccharomyces cerevisiae genome

1 reference

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30 September 2017

Alternative splicing of transcripts encoding Toll-like plant resistance proteins - what's the functional relevance to innate immunity?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=353228

30 September 2017

Full-length messenger RNA sequences greatly improve genome annotation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=353228

30 September 2017

Synteny between Arabidopsis thaliana and rice at the genome level: a tool to identify conservation in the ongoing rice genome sequencing project

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=353228

30 September 2017

A Draft Sequence of the Rice Genome (Oryza sativa L. ssp. japonica)

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=353228

30 September 2017

Functional annotation of a full-length Arabidopsis cDNA collection

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=353228

30 September 2017

A large family of genes that share homology with CLAVATA3

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=353228

30 September 2017

Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=353228

30 September 2017

Analysis of the genome sequence of the flowering plant Arabidopsis thaliana

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=353228

30 September 2017

Estimate of human gene number provided by genome-wide analysis using Tetraodon nigroviridis DNA sequence

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=353228

30 September 2017

In search of the first flower: A jurassic angiosperm, archaefructus, from northeast china

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=353228

30 September 2017

A computer program for aligning a cDNA sequence with a genomic DNA sequence

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=353228

30 September 2017

Normalization and subtraction: two approaches to facilitate gene discovery

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=353228

30 September 2017

Splice site prediction in Arabidopsis thaliana pre-mRNA by combining local and global sequence information

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=353228

30 September 2017

Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=353228

28 June 2018

Genome-wide analyses based on comparative genomics.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=353228

21 September 2018

A new AOX homologous gene OsIM1 from rice (Oryza sativa L.) with an alternative splicing mechanism under salt stress.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=353228

21 September 2018

Detecting the undetectable: uncovering duplicated segments in Arabidopsis by comparison with rice.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=353228

21 September 2018

Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=353228

21 September 2018

Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=353228

21 September 2018

Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=353228

21 September 2018

Rates of nucleotide substitution in angiosperm mitochondrial DNA sequences and dates of divergence between Brassica and other angiosperm lineages.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=353228

21 September 2018

EST_GENOME: a program to align spliced DNA sequences to unspliced genomic DNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=353228

21 September 2018

Identifiers

10.1101/GR.1515604

1 reference

Europe PubMed Central

14 August 2017

1 reference

Europe PubMed Central

14 August 2017

1 reference

Europe PubMed Central

14 August 2017

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