(Q36512171)

14 August 2017

Birth-death skyline plot reveals temporal changes of epidemic spread in HIV and hepatitis C virus (HCV) (English)

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14 August 2017

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14 August 2017

Denise Kühnert

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language of work or name

English

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publication date

17 December 2012

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Proceedings of the National Academy of Sciences of the United States of America

14 August 2017

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14 August 2017

110

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1

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14 August 2017

228-233

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PMCID

3538216

describes a project that uses

14 August 2017

Bayes' theorem

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18 June 2022

https://europepmc.org/article/PMC/3538216

based on heuristic

inferred from PubMed Central ID database lookup

cites work

Complex population dynamics and the coalescent under neutrality

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3538216

Rates of coalescence for common epidemiological models at equilibrium

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3538216

Phylogenetic and epidemic modeling of rapidly evolving infectious diseases

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3538216

Inference for nonlinear epidemiological models using genealogies and time series

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3538216

Estimating the basic reproductive number from viral sequence data.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3538216

Prevention of HIV-1 infection with early antiretroviral therapy

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3538216

Mammalian phylogeny reveals recent diversification rate shifts

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3538216

A Bayesian phylogenetic method to estimate unknown sequence ages

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3538216

Sampling-through-time in birth-death trees

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3538216

Phylodynamics of infectious disease epidemics

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3538216

Smooth skyride through a rough skyline: Bayesian coalescent-based inference of population dynamics

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3538216

BEAST: Bayesian evolutionary analysis by sampling trees

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3538216

Genetic analysis reveals the complex structure of HIV-1 transmission within defined risk groups

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3538216

Bayesian coalescent inference of past population dynamics from molecular sequences

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3538216

Inference of demographic history from genealogical trees using reversible jump Markov chain Monte Carlo

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3538216

Estimating mutation parameters, population history and genealogy simultaneously from temporally spaced sequence data

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3538216

Exploring the demographic history of DNA sequences using the generalized skyline plot

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3538216

The epidemic behavior of the hepatitis C virus

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3538216

An integrated framework for the inference of viral population history from reconstructed genealogies.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3538216

The role of parenteral antischistosomal therapy in the spread of hepatitis C virus in Egypt

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3538216

Evolutionary trees from DNA sequences: A maximum likelihood approach

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3538216

Population biology of infectious diseases: Part I

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3538216

A method for investigating relative timing information on phylogenetic trees

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3538216

Stochastic modeling of nonlinear epidemiology

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3538216

A Contribution to the Mathematical Theory of Epidemics

21 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073%2FPNAS.1207965110

Equation of State Calculations by Fast Computing Machines

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073%2FPNAS.1207965110

Monte Carlo sampling methods using Markov chains and their applications

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073%2FPNAS.1207965110

21 January 2018

Identifiers

DOI

10.1073/PNAS.1207965110

1 reference

14 August 2017

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1 reference

14 August 2017

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PMCID

3538216