(Q36520912)

14 August 2017

Intramolecular secondary structure rearrangement by the kissing interaction of the Neurospora VS ribozyme (English)

1 reference

14 August 2017

0 references

Andersen AA

1

1 reference

PMCID

35410

14 August 2017

Collins RA

series ordinal

2

1 reference

PMCID

35410

14 August 2017

language of work or name

English

0 references

publication date

26 June 2001

1 reference

Proceedings of the National Academy of Sciences of the United States of America

14 August 2017

1 reference

14 August 2017

98

1 reference

14 August 2017

14

1 reference

14 August 2017

7730-7735

1 reference

Structure of the ribozyme substrate hairpin of Neurospora VS RNA: a close look at the cleavage site

14 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=35410

Progression of a loop-loop complex to a four-way junction is crucial for the activity of a regulatory antisense RNA

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=35410

Switching on and off with RNA.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=35410

A trans-acting RNA as a control switch in Escherichia coli: DsrA modulates function by forming alternative structures

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=35410

A retroviral RNA kissing complex containing only two G⋅C base pairs

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=35410

An unusual structure formed by antisense-target RNA binding involves an extended kissing complex with a four-way junction and a side-by-side helical alignment

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=35410

Dimerization of HIV-1 genomic RNA of subtypes A and B: RNA loop structure and magnesium binding

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=35410

NMR solution structure of the lead-dependent ribozyme: evidence for dynamics in RNA catalysis

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=35410

Crystal structure of a hepatitis delta virus ribozyme

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=35410

Mapping of a protein-RNA kissing hairpin interface: Rom and Tar-Tar*

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=35410

Structure of the dimer initiation complex of HIV-1 genomic RNA

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=35410

The structure of an RNA "kissing" hairpin complex of the HIV TAR hairpin loop and its complement

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=35410

A long-range pseudoknot is required for activity of the Neurospora VS ribozyme

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=35410

Evidence that a kissing loop structure facilitates genomic RNA dimerisation in HIV-1.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=35410

Characterization of a "kissing" hairpin complex derived from the human immunodeficiency virus genome

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=35410

Efficient trans-cleavage of a stem-loop RNA substrate by a ribozyme derived from neurospora VS RNA

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=35410

A secondary-structure model for the self-cleaving region of Neurospora VS RNA.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=35410

Bent helix formation between RNA hairpins with complementary loops

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=35410

Chemical probes for higher-order structure in RNA

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=35410

Three-Dimensional Tertiary Structure of Yeast Phenylalanine Transfer RNA

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=35410

Synthesis of small RNAs using T7 RNA polymerase

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=35410

A site-specific self-cleavage reaction performed by a novel RNA in Neurospora mitochondria

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=35410

A small metalloribozyme with a two-step mechanism

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=35410

Structure of yeast phenylalanine transfer RNA at 2.5 A resolution

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=35410

Dimerization of retroviral genomic RNAs: structural and functional implications

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=35410

Defining functional groups, core structural features and inter-domain tertiary contacts essential for group II intron self-splicing: a NAIM analysis

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=35410

Antisense RNA control of plasmid R1 replication. The dominant product of the antisense rna-mrna binding is not a full RNA duplex.

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=35410

An antisense/target RNA duplex or a strong intramolecular RNA structure 5' of a translation initiation signal blocks ribosome binding: the case of plasmid R1.

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=35410

Modification interference analysis of reactions using RNA substrates

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=35410

Fast folding of a ribozyme by stabilizing core interactions: evidence for multiple folding pathways in RNA.

28 June 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.141039198

NMR structure of the mature dimer initiation complex of HIV-1 genomic RNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.141039198

Nucleotide sequence requirements for self-cleavage of Neurospora VS RNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.141039198

RNA Structure and Stability

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.141039198

New loop-loop tertiary interactions in self-splicing introns of subgroup IC and ID: a complete 3D model of the Tetrahymena thermophila ribozyme

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.141039198

Kissing-loop model of HIV-1 genome dimerization: HIV-1 RNAs can assume alternative dimeric forms, and all sequences upstream or downstream of hairpin 248-271 are dispensable for dimer formation

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.141039198

HIV-1 genome dimerization: formation kinetics and thermal stability of dimeric HIV-1Lai RNAs are not improved by the 1-232 and 296-790 regions flanking the kissing-loop domain

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.141039198

A kissing complex together with a stable dimer is involved in the HIV-1Lai RNA dimerization process in vitro

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.141039198

Structural analysis of late intermediate complex formed between plasmid ColIb-P9 Inc RNA and its target RNA. How does a single antisense RNA repress translation of two genes at different rates?

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.141039198

Rearrangement of a stable RNA secondary structure during VS ribozyme catalysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.141039198

Smaller, faster ribozymes reveal the catalytic core of Neurospora VS RNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.141039198

9 Specific labeling of 3′ termini of RNA with T4 RNA ligase

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.141039198

A guide for probing native small nuclear RNA and ribonucleoprotein structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.141039198

The hairpin ribozyme: structure, assembly and catalysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.141039198

Order, dynamics and metal-binding in the lead-dependent ribozyme

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.141039198

Kissing and RNA stability in antisense control of plasmid replication

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.141039198

21 January 2018

Identifiers

DOI

10.1073/PNAS.141039198

1 reference

14 August 2017

0 references

1 reference

14 August 2017

1 reference

PMCID

35410