(Q36524364)

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The optimization principle in phylogenetic analysis tends to give incorrect topologies when the number of nucleotides or amino acids used is small

scientific article published on October 1998

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scholarly article

1 reference

Europe PubMed Central

PMC publication ID

14 August 2017

The optimization principle in phylogenetic analysis tends to give incorrect topologies when the number of nucleotides or amino acids used is small (English)

1 reference

Europe PubMed Central

PMC publication ID

14 August 2017

1 reference

based on heuristic

inferred from title

1

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Nei M

1 reference

Europe PubMed Central

14 August 2017

PMC publication ID

author name string

Kumar S

2

1 reference

Europe PubMed Central

PMC publication ID

14 August 2017

Takahashi K

3

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Europe PubMed Central

PMC publication ID

14 August 2017

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publication date

1 October 1998

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Europe PubMed Central

PMC publication ID

14 August 2017

Proceedings of the National Academy of Sciences of the United States of America

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Europe PubMed Central

PMC publication ID

14 August 2017

95

1 reference

Europe PubMed Central

PMC publication ID

14 August 2017

21

1 reference

Europe PubMed Central

PMC publication ID

14 August 2017

12390-12397

1 reference

Europe PubMed Central

PMC publication ID

14 August 2017

Using mitochondrial and nuclear DNA markers to reconstruct human evolution

1 reference

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30 September 2017

BIONJ: an improved version of the NJ algorithm based on a simple model of sequence data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22842

30 September 2017

The major compositional transitions in the vertebrate genome

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22842

30 September 2017

https://api.crossref.org/works/10.1073%2FPNAS.95.21.12390

21 January 2018

A stepwise algorithm for finding minimum evolution trees

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22842

30 September 2017

Rates of nucleotide substitution in primates and rodents and the generation-time effect hypothesis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22842

30 September 2017

fastDNAmL: a tool for construction of phylogenetic trees of DNA sequences using maximum likelihood.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22842

30 September 2017

A simulation comparison of phylogeny algorithms under equal and unequal evolutionary rates

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22842

30 September 2017

Success of maximum likelihood phylogeny inference in the four-taxon case

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22842

30 September 2017

High resolution of human evolutionary trees with polymorphic microsatellites

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22842

30 September 2017

Evolutionary trees from DNA sequences: A maximum likelihood approach

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22842

30 September 2017

Phylogenetic analysis. Models and estimation procedures

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22842

30 September 2017

Construction of phylogenetic trees

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22842

30 September 2017

The neighbor-joining method: a new method for reconstructing phylogenetic trees

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22842

30 September 2017

Accuracy of phylogenetic trees estimated from DNA sequence data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22842

30 September 2017

Phylogenies from molecular sequences: inference and reliability

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22842

30 September 2017

Animal mitochondrial DNA: structure and evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22842

30 September 2017

Higher rates of amino acid substitution in rodents than in humans

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22842

30 September 2017

Phylogenetic analysis in molecular evolutionary genetics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22842

30 September 2017

Bootstrap confidence levels for phylogenetic trees

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22842

30 September 2017

Phylogenetic analysis using parsimony and likelihood methods

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22842

28 June 2018

When is it safe to use an oversimplified substitution model in tree-making?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22842

28 June 2018

Interior-branch and bootstrap tests of phylogenetic trees.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22842

28 June 2018

Property and efficiency of the maximum likelihood method for molecular phylogeny.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22842

28 June 2018

The number of nucleotides required to determine the branching order of three species, with special reference to the human-chimpanzee-gorilla divergence.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22842

28 June 2018

Human origins and analysis of mitochondrial DNA sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22842

28 June 2018

Human origins and analysis of mitochondrial DNA sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22842

28 June 2018

Evolutionary relationships of human populations on a global scale

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22842

21 September 2018

Theoretical foundation of the minimum-evolution method of phylogenetic inference.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22842

21 September 2018

Relative efficiencies of the maximum-likelihood, neighbor-joining, and maximum-parsimony methods when substitution rate varies with site.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22842

21 September 2018

Toward Defining the Course of Evolution: Minimum Change for a Specific Tree Topology

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.95.21.12390

21 January 2018

Taxonomic evaluation of the Streptomyces griseus clade using multilocus sequence analysis and DNA-DNA hybridization, with proposal to combine 29 species and three subspecies as 11 genomic species.

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.95.21.12390

21 January 2018

Confidence Limits on Phylogenies: an Approach using the Bootstrap

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.95.21.12390

21 January 2018

Inconsistency of the Maximum-parsimony Method: the Case of Five Taxa With a Molecular Clock

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.95.21.12390

21 January 2018

Statistical properties of bootstrap estimation of phylogenetic variability from nucleotide sequences. I. Four taxa with a molecular clock

1 reference

https://pubmed.ncbi.nlm.nih.gov/9770497

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

On the maximum likelihood method in molecular phylogenetics

1 reference

https://pubmed.ncbi.nlm.nih.gov/9770497

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Relative efficiencies of the maximum parsimony and distance-matrix methods in obtaining the correct phylogenetic tree

1 reference

https://pubmed.ncbi.nlm.nih.gov/9770497

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

How often do wrong models produce better phylogenies?

1 reference

https://pubmed.ncbi.nlm.nih.gov/9770497

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1073/PNAS.95.21.12390

1 reference

Europe PubMed Central

PMC publication ID

14 August 2017

1998PNAS...9512390N

0 references

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

14 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

14 August 2017

ResearchGate publication ID

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