(Q36561636)

14 August 2017

On achieving better than 1-A accuracy in a simulation of a large protein: Streptomyces griseus protease A (English)

1 reference

14 August 2017

Streptomyces griseus

1 reference

D H Kitson

1

1 reference

14 August 2017

F Avbelj

2

1 reference

14 August 2017

J Moult

3

1 reference

14 August 2017

D T Nguyen

4

1 reference

14 August 2017

J E Mertz

5

1 reference

14 August 2017

D Hadzi

6

1 reference

14 August 2017

A T Hagler

7

1 reference

14 August 2017

language of work or name

English

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publication date

1 October 1993

1 reference

Proceedings of the National Academy of Sciences of the United States of America

14 August 2017

1 reference

14 August 2017

90

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14 August 2017

19

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14 August 2017

8920-8924

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Crystallographic R factor refinement by molecular dynamics

14 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=47472

Computer simulation of the dynamics of hydrated protein crystals and its comparison with x-ray data

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=47472

The interpretation of protein structures: Estimation of static accessibility

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=47472

A comparison of the structure and dynamics of avian pancreatic polypeptide hormone in solution and in the crystal

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=47472

Electron density calculations as an extension of protein structure refinement. Streptomyces griseus protease A at 1.5 A resolution

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=47472

The nature of enzyme catalysis in trypsin

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=47472

A free-energy perturbation study of the binding of methotrexate to mutants of dihydrofolate reductase

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=47472

Accurate simulation of protein dynamics in solution

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=47472

Anatomy of a conformational change: hinged "lid" motion of the triosephosphate isomerase loop.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=47472

Domain communication in the dynamical structure of human immunodeficiency virus 1 protease

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=47472

Molecular dynamics study of the structure and dynamics of a protein molecule in a crystalline ionic environment, Streptomyces griseus protease A.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=47472

Design of biologically active, conformationally constrained GnRH antagonists

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=47472

A 500 ps molecular dynamics simulation study of interleukin-1 beta in water. Correlation with nuclear magnetic resonance spectroscopy and crystallography.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=47472

Dynamics of folded proteins

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=47472

Protein structure refinement: Streptomyces griseus serine protease A at 1.8 Å resolution

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=47472

Solution conformation of a heptadecapeptide comprising the DNA binding helix F of the cyclic AMP receptor protein of Escherichia coli. Combined use of 1H nuclear magnetic resonance and restrained molecular dynamics.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=47472

Theoretical studies of the structure and molecular dynamics of a peptide crystal.

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=47472

Structure and energetics of ligand binding to proteins: Escherichia coli dihydrofolate reductase-trimethoprim, a drug-receptor system.

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=47472

Evaluation of catalytic free energies in genetically modified proteins

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=47472

The effects of truncating long-range forces on protein dynamics.

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=47472

MD simulation of subtilisin BPN' in a crystal environment

28 June 2018

1 reference

12 December 2020

Simulations of proteins in water

1 reference

12 December 2020

Molecular dynamics simulation of HIV-1 protease in a crystalline environment and in solution

1 reference

12 December 2020

Molecular dynamics of HIV-1 protease

1 reference

12 December 2020

Catalysis of a rotational transition in a peptide by crystal forces

1 reference

12 December 2020

Identifiers

DOI

10.1073/PNAS.90.19.8920

1 reference

14 August 2017

0 references

1 reference

14 August 2017

PubMed publication ID

8415632

1 reference