(Q36570626)

15 August 2017

Bias in phylogenetic tree reconciliation methods: implications for vertebrate genome evolution (English)

1 reference

phylogenetic reconciliation

15 August 2017

1 reference

1 reference

1 reference

1 reference

1

Matthew W Hahn

1 reference

15 August 2017

1 January 2007

1 reference

15 August 2017

1 reference

15 August 2017

8

1 reference

15 August 2017

7

1 reference

15 August 2017

R141

1 reference

https://scigraph.springernature.com/pub.10.1186/gb-2007-8-7-r141

15 August 2017

0 references

cites work

The evolution of mammalian gene families

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323230

Widespread Discordance of Gene Trees with Species Tree in Drosophila: Evidence for Incomplete Lineage Sorting

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323230

CAFE: a computational tool for the study of gene family evolution

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323230

Phylogenomics: the beginning of incongruence?

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323230

Evolutionary change of the numbers of homeobox genes in bilateral animals

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323230

Estimating the tempo and mode of gene family evolution from comparative genomic data

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323230

Performance of maximum parsimony and likelihood phylogenetics when evolution is heterogeneous

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323230

Genome-scale data, angiosperm relationships, and "ending incongruence": a cautionary tale in phylogenetics

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323230

Long branch attraction, taxon sampling, and the earliest angiosperms: Amborella or monocots?

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323230

Myosin gene mutation correlates with anatomical changes in the human lineage

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323230

MUSCLE: multiple sequence alignment with high accuracy and high throughput

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323230

Extensive gene gain associated with adaptive evolution of poxviruses

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323230

How should species phylogenies be inferred from sequence data?

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323230

Lineage-specific loss and divergence of functionally linked genes in eukaryotes

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323230

When less is more: gene loss as an engine of evolutionary change

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323230

The neighbor-joining method: a new method for reconstructing phylogenetic trees

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323230

Temporal patterns of fruit fly (Drosophila) evolution revealed by mutation clocks

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323230

Optimal gene trees from sequences and species trees using a soft interpretation of parsimony.

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323230

The gain and loss of genes during 600 million years of vertebrate evolution

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323230

A hybrid micro-macroevolutionary approach to gene tree reconstruction.

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323230

Gene tree distributions under the coalescent process

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323230

Bayesian gene/species tree reconciliation and orthology analysis using MCMC.

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323230

Amphioxus mitochondrial DNA, chordate phylogeny, and the limits of inference based on comparisons of sequences

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323230

A simple algorithm to infer gene duplication and speciation events on a gene tree.

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323230

GeneTree: comparing gene and species phylogenies using reconciled trees.

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323230

Choosing among alternative trees of multigene families

21 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17634151

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Reconciliation with non-binary species trees

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17634151

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

THE BAR "GENE" A DUPLICATION

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17634151

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/GB-2007-8-7-R141

1 reference

PMCID

2323230

Dimensions Publication ID

15 August 2017

0 references

1 reference

15 August 2017

1 reference

PMCID

2323230