(Q36592406)

English

Integrated cistromic and expression analysis of amplified NKX2-1 in lung adenocarcinoma identifies LMO3 as a functional transcriptional target

scientific article published on 15 January 2013

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scholarly article

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Europe PubMed Central

PMC publication ID

15 August 2017

Integrated cistromic and expression analysis of amplified NKX2-1 in lung adenocarcinoma identifies LMO3 as a functional transcriptional target (English)

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Europe PubMed Central

PMC publication ID

15 August 2017

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inferred from title

Matthew Meyerson

18

object named as

Matthew Meyerson

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Europe PubMed Central

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15 August 2017

15

object named as

William C Hahn

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15 August 2017

Anna C Schinzel

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Anna C Schinzel

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15 August 2017

17

object named as

Tyler Jacks

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15 August 2017

author name string

Hideo Watanabe

1

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15 August 2017

Joshua M Francis

2

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15 August 2017

Michele S Woo

3

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15 August 2017

Banafsheh Etemad

4

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15 August 2017

Wenchu Lin

5

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15 August 2017

Daniel F Fries

6

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15 August 2017

Shouyong Peng

7

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15 August 2017

Eric L Snyder

8

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15 August 2017

Purushothama Rao Tata

9

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15 August 2017

Francesca Izzo

10

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15 August 2017

Jeonghee Cho

12

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15 August 2017

Peter S Hammerman

13

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15 August 2017

Roel G Verhaak

14

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15 August 2017

Jayaraj Rajagopal

16

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15 August 2017

publication date

15 January 2013

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15 August 2017

Genes & Development

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15 August 2017

27

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15 August 2017

2

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15 August 2017

197-210

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15 August 2017

Kras(G12D) and Nkx2-1 haploinsufficiency induce mucinous adenocarcinoma of the lung

1 reference

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Genomic landscape of non-small cell lung cancer in smokers and never-smokers

1 reference

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Mapping the hallmarks of lung adenocarcinoma with massively parallel sequencing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3566312

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NKX2-1/TITF1/TTF-1-Induced ROR1 is required to sustain EGFR survival signaling in lung adenocarcinoma

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3566312

9 September 2017

Genome-wide analyses of Nkx2-1 binding to transcriptional target genes uncover novel regulatory patterns conserved in lung development and tumors

1 reference

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The mutational landscape of head and neck squamous cell carcinoma

1 reference

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Inferring transcription factor complexes from ChIP-seq data

1 reference

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MEME-ChIP: motif analysis of large DNA datasets

1 reference

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9 September 2017

Suppression of lung adenocarcinoma progression by Nkx2-1

1 reference

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The Lmo2 oncogene initiates leukemia in mice by inducing thymocyte self-renewal

1 reference

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9 September 2017

Cooperative interaction between retinoic acid receptor-alpha and estrogen receptor in breast cancer

1 reference

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SOX2 is an amplified lineage-survival oncogene in lung and esophageal squamous cell carcinomas

1 reference

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The first 30 years of p53: growing ever more complex

1 reference

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CEAS: cis-regulatory element annotation system

1 reference

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9 September 2017

Genomic antagonism between retinoic acid and estrogen signaling in breast cancer.

1 reference

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Predicting drug susceptibility of non-small cell lung cancers based on genetic lesions

1 reference

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Characterizing the developmental pathways TTF-1, NKX2-8, and PAX9 in lung cancer

1 reference

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9 September 2017

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

1 reference

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9 September 2017

Highly parallel identification of essential genes in cancer cells

1 reference

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9 September 2017

Clinical significance of TTF-1 protein expression and TTF-1 gene amplification in lung adenocarcinoma

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3566312

9 September 2017

Thyroid transcription factor-1 (TTF-1/Nkx2.1/TITF1) gene regulation in the lung

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3566312

9 September 2017

Somatic mutations affect key pathways in lung adenocarcinoma

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3566312

9 September 2017

Model-based analysis of ChIP-Seq (MACS)

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3566312

9 September 2017

Gene expression-based survival prediction in lung adenocarcinoma: a multi-site, blinded validation study

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3566312

9 September 2017

Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3566312

9 September 2017

Genomic profiling identifies TITF1 as a lineage-specific oncogene amplified in lung cancer

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3566312

9 September 2017

Characterizing the cancer genome in lung adenocarcinoma

1 reference

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9 September 2017

Oncogenic cooperation and coamplification of developmental transcription factor genes in lung cancer

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3566312

9 September 2017

Lineage-specific dependency of lung adenocarcinomas on the lung development regulator TTF-1

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3566312

9 September 2017

Foxp2 and Foxp1 cooperatively regulate lung and esophagus development

1 reference

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9 September 2017

Genome-wide analysis of genetic alterations in acute lymphoblastic leukaemia

1 reference

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9 September 2017

Transcriptional control of lung morphogenesis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3566312

9 September 2017

Physical and functional interactions between homeodomain NKX2.1 and winged helix/forkhead FOXA1 in lung epithelial cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3566312

9 September 2017

Thyroid transcription factor in differentiating type II cells: regulation, isoforms, and target genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3566312

9 September 2017

Lineage dependency and lineage-survival oncogenes in human cancer

1 reference

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9 September 2017

Hop functions downstream of Nkx2.1 and GATA6 to mediate HDAC-dependent negative regulation of pulmonary gene expression

1 reference

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Recurrent fusion of TMPRSS2 and ETS transcription factor genes in prostate cancer.

1 reference

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9 September 2017

Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles

1 reference

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9 September 2017

Integrative genomic analyses identify MITF as a lineage survival oncogene amplified in malignant melanoma

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3566312

9 September 2017

LMO3 interacts with neuronal transcription factor, HEN2, and acts as an oncogene in neuroblastoma

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3566312

9 September 2017

Identification and analysis of vnd/NK-2 homeodomain binding sites in genomic DNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3566312

9 September 2017

Compensatory roles of Foxa1 and Foxa2 during lung morphogenesis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3566312

9 September 2017

Sequence-specific DNA binding by the vnd/NK-2 homeodomain of Drosophila

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3566312

9 September 2017

Classification of human lung carcinomas by mRNA expression profiling reveals distinct adenocarcinoma subclasses

1 reference

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9 September 2017

Significance analysis of microarrays applied to the ionizing radiation response

1 reference

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9 September 2017

Transcription factors in mouse lung development and function

1 reference

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9 September 2017

Inhibition of distal lung morphogenesis in Nkx2.1(-/-) embryos

1 reference

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9 September 2017

Fusion of TEL, the ETS-variant gene 6 (ETV6), to the receptor-associated kinase JAK2 as a result of t(9;12) in a lymphoid and t(9;15;12) in a myeloid leukemia

1 reference

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The lung-specific surfactant protein B gene promoter is a target for thyroid transcription factor 1 and hepatocyte nuclear factor 3, indicating common factors for organ-specific gene expression along the foregut axis

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1 reference

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Translocation of the c-myc gene into the immunoglobulin heavy chain locus in human Burkitt lymphoma and murine plasmacytoma cells

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The mechanism of chromosomal translocation t(11;14) involving the T-cell receptor C delta locus on human chromosome 14q11 and a transcribed region of chromosome 11p15

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The t(11;14)(p15;q11) in a T-cell acute lymphoblastic leukemia cell line activates multiple transcripts, including Ttg-1, a gene encoding a potential zinc finger protein

1 reference

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t(8;21) breakpoints on chromosome 21 in acute myeloid leukemia are clustered within a limited region of a single gene, AML1

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Gene fusion with an ETS DNA-binding domain caused by chromosome translocation in human tumours

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An effective statistical evaluation of ChIPseq dataset similarity

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TTF-1 expression in pulmonary adenocarcinomas.

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Immunohistochemical analysis of thyroid-specific transcription factors in thyroid tumors

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Expression of thyroid-specific transcription factors TTF-1 and PAX-8 in human thyroid neoplasms

1 reference

https://pubmed.ncbi.nlm.nih.gov/23322301

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

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1 reference

https://pubmed.ncbi.nlm.nih.gov/23322301

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Surfactant proteins and thyroid transcription factor-1 in pulmonary and breast carcinomas

1 reference

https://pubmed.ncbi.nlm.nih.gov/23322301

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1101/GAD.203208.112

1 reference

Europe PubMed Central

PMC publication ID

15 August 2017

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

15 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

15 August 2017

ResearchGate publication ID

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