(Q36616557)

15 August 2017

The standard operating procedure of the DOE-JGI Metagenome Annotation Pipeline (MAP v.4) (English)

1 reference

15 August 2017

2

1 reference

15 August 2017

14

1 reference

15 August 2017

11

Amrita Pati

1 reference

15 August 2017

1

Marcel Huntemann

1 reference

15 August 2017

Konstantinos Mavromatis

3

object named as

Konstantinos Mavromatis

1 reference

15 August 2017

13

Victor M Markowitz

1 reference

15 August 2017

8

Ernest Szeto

1 reference

15 August 2017

9

Manoj Pillay

1 reference

15 August 2017

6

Kristin Tennessen

1 reference

15 August 2017

7

Krishnaveni Palaniappan

1 reference

15 August 2017

H James Tripp

4

1 reference

15 August 2017

David Paez-Espino

5

1 reference

15 August 2017

I-Min A Chen

10

1 reference

15 August 2017

Torben Nielsen

12

1 reference

15 August 2017

24 February 2016

1 reference

Standards in genomic sciences

15 August 2017

1 reference

15 August 2017

11

1 reference

15 August 2017

17

1 reference

https://scigraph.springernature.com/pub.10.1186/s40793-016-0138-x

15 August 2017

0 references

cites work

The Genomes OnLine Database (GOLD) v.5: a metadata management system based on a four level (meta)genome project classification.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4766715

Data, information, knowledge and principle: back to metabolism in KEGG

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4766715

IMG/M 4 version of the integrated metagenome comparative analysis system

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4766715

Direct comparisons of Illumina vs. Roche 454 sequencing technologies on the same microbial community DNA sample

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4766715

The Pfam protein families database

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4766715

Accelerated Profile HMM Searches

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4766715

FragGeneScan: predicting genes in short and error-prone reads

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4766715

Search and clustering orders of magnitude faster than BLAST

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4766715

Prodigal: prokaryotic gene recognition and translation initiation site identification

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4766715

MetaGeneAnnotator: detecting species-specific patterns of ribosomal binding site for precise gene prediction in anonymous prokaryotic and phage genomes

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4766715

CRISPR Recognition Tool (CRT): a tool for automatic detection of clustered regularly interspaced palindromic repeats

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4766715

PILER-CR: fast and accurate identification of CRISPR repeats

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4766715

CDD: a conserved domain database for interactive domain family analysis

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4766715

GeneMark.hmm: new solutions for gene finding

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4766715

tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence

30 September 2017

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4766715

30 September 2017

https://api.crossref.org/works/10.1186%2FS40793-016-0138-X

Systematic artifacts in metagenomes from complex microbial communities.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4766715

DNA sequence quality trimming and vector removal.

20 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4766715

A fast and symmetric DUST implementation to mask low-complexity DNA sequences

20 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26918089

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/S40793-016-0138-X

1 reference

Dimensions Publication ID

15 August 2017

0 references

1 reference

15 August 2017

PubMed publication ID

26918089

1 reference