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Thermodynamics of sequence-specific protein-DNA interactions.
scientific article published on November 1996
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Europe PubMed Central
PubMed publication ID
17029807
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17029807%20AND%20SRC:MED&resulttype=core&format=json
retrieved
20 December 2019
title
Thermodynamics of sequence-specific protein-DNA interactions
(English)
1 reference
stated in
Europe PubMed Central
PubMed publication ID
17029807
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17029807%20AND%20SRC:MED&resulttype=core&format=json
retrieved
20 December 2019
main subject
thermodynamics
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author
Torleif Härd
series ordinal
1
1 reference
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Europe PubMed Central
PubMed publication ID
17029807
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17029807%20AND%20SRC:MED&resulttype=core&format=json
retrieved
20 December 2019
Thomas Lundbäck
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2
1 reference
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Europe PubMed Central
PubMed publication ID
17029807
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17029807%20AND%20SRC:MED&resulttype=core&format=json
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20 December 2019
author name string
Härd T
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1
1 reference
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Europe PubMed Central
PubMed publication ID
17029807
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15 August 2017
Lundbäck T
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2
1 reference
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Europe PubMed Central
PubMed publication ID
17029807
retrieved
15 August 2017
publication date
1 November 1996
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Europe PubMed Central
PubMed publication ID
17029807
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17029807%20AND%20SRC:MED&resulttype=core&format=json
retrieved
20 December 2019
published in
Biophysical Chemistry
1 reference
stated in
Europe PubMed Central
PubMed publication ID
17029807
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17029807%20AND%20SRC:MED&resulttype=core&format=json
retrieved
20 December 2019
volume
62
1 reference
stated in
Europe PubMed Central
PubMed publication ID
17029807
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17029807%20AND%20SRC:MED&resulttype=core&format=json
retrieved
20 December 2019
issue
1-3
1 reference
stated in
Europe PubMed Central
PubMed publication ID
17029807
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17029807%20AND%20SRC:MED&resulttype=core&format=json
retrieved
20 December 2019
page(s)
121-139
1 reference
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Europe PubMed Central
PubMed publication ID
17029807
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17029807%20AND%20SRC:MED&resulttype=core&format=json
retrieved
20 December 2019
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Specific Binding of the λ Phage Repressor to λ DNA
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DNA-Protein Interactions
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Diffusion controlled reaction rates in spheroidal geometry. Application to repressor--operator association and membrane bound enzymes
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Diffusion-driven mechanisms of protein translocation on nucleic acids. 3. The Escherichia coli lac repressor--operator interaction: kinetic measurements and conclusions.
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Lac repressor-operator interaction. I. Equilibrium studies
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DNAase footprinting a simple method for the detection of protein-DNA binding specificity
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Thermodynamic and Kinetic Characterization of the Binding of the TATA Binding Protein to the Adenovirus E4 Promoter
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A method for linking fluorescent labels to polynucleotides: application to studies of ribosome-ribonucleic acid interactions
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Macromolecular binding equilibria in the lac repressor system: studies using high-pressure fluorescence spectroscopy.
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Equilibria and kinetics of lac repressor-operator interactions by polyacrylamide gel electrophoresis
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A gel electrophoresis method for quantifying the binding of proteins to specific DNA regions: application to components of the Escherichia coli lactose operon regulatory system
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Measurement of DNA-protein equilibria using gel chromatography: application to the HinfI restriction endonuclease.
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Calorimetric studies of the energetics of protein-DNA interactions in the E. coli methionine repressor (MetJ) system
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Replacement of potassium chloride by potassium glutamate dramatically enhances protein-DNA interactions in vitro
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Thermodynamic stoichiometries of participation of water, cations and anions in specific and non-specific binding of lac repressor to DNA. Possible thermodynamic origins of the "glutamate effect" on protein-DNA interactions
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Grand canonical Monte Carlo molecular and thermodynamic predictions of ion effects on binding of an oligocation (L8+) to the center of DNA oligomers
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Thermodynamics of single-stranded RNA and DNA interactions with oligolysines containing tryptophan. Effects of base composition
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Hin recombinase bound to DNA: the origin of specificity in major and minor groove interactions
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Structure of Bam HI endonuclease bound to DNA: partial folding and unfolding on DNA binding
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The crystal structure of the estrogen receptor DNA-binding domain bound to DNA: how receptors discriminate between their response elements
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1.9 A resolution refined structure of TBP recognizing the minor groove of TATAAAAG
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Dominant forces in protein folding
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reference URL
https://api.crossref.org/works/10.1016%2FS0301-4622%2896%2902197-7
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Role of the hydrophobic effect in stability of site-specific protein-DNA complexes
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0301-4622%2896%2902197-7
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Thermodynamics of ligand binding to trp repressor
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0301-4622%2896%2902197-7
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Thermodynamic evaluation of binding interactions in the methionine repressor system of Escherichia coli using isothermal titration calorimetry.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0301-4622%2896%2902197-7
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Calorimetric analysis of lambda cI repressor binding to DNA operator sites
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0301-4622%2896%2902197-7
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Binding characteristics of Hoechst 33258 with calf thymus DNA, poly[d(A-T)] and d(CCGGAATTCCGG): multiple stoichiometries and determination of tight binding with a wide spectrum of site affinities
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0301-4622%2896%2902197-7
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Interaction of minor groove ligands to an AAATT/AATTT site: correlation of thermodynamic characterization and solution structure
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0301-4622%2896%2902197-7
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Coupling of local folding to site-specific binding of proteins to DNA
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0301-4622%2896%2902197-7
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Protein hydration in aqueous solution
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0301-4622%2896%2902197-7
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Localization of bound water in the solution structure of a complex of the erythroid transcription factor GATA-1 with DNA.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0301-4622%2896%2902197-7
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
NMR structure of a specific DNA complex of Zn-containing DNA binding domain of GATA-1
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0301-4622%2896%2902197-7
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
DNA recognition by beta-sheets in the Arc repressor-operator crystal structure
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0301-4622%2896%2902197-7
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
The crystal structure of trp aporepressor at 1.8 A shows how binding tryptophan enhances DNA affinity
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0301-4622%2896%2902197-7
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Refined solution structures of the Escherichia coli trp holo- and aporepressor
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0301-4622%2896%2902197-7
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
The solution structures of the trp repressor-operator DNA complex
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0301-4622%2896%2902197-7
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Crystal structure of the lactose operon repressor and its complexes with DNA and inducer
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0301-4622%2896%2902197-7
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Unusual dynamic features of the trp repressor from Escherichia coli
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0301-4622%2896%2902197-7
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Molecular dynamics studies of a DNA‐binding protein: 1. A comparison of the trp repressor and trp aporepressor aqueous simulations
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0301-4622%2896%2902197-7
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Evidence for coupling of folding and function in trp repressor: physical characterization of the superrepressor mutant AV77.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0301-4622%2896%2902197-7
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Modular structure of transcription factors: implications for gene regulation
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0301-4622%2896%2902197-7
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
The DNA binding arm of lambda repressor: critical contacts from a flexible region
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0301-4622%2896%2902197-7
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Design of DNA-binding peptides based on the leucine zipper motif
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0301-4622%2896%2902197-7
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Folding transition in the DMA-binding domain of GCN4 on specific binding to DNA
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0301-4622%2896%2902197-7
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Modulation of transcription factor Ets-1 DNA binding: DNA-induced unfolding of an alpha helix
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0301-4622%2896%2902197-7
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Contribution to the thermodynamics of protein folding from the reduction in water-accessible nonpolar surface area.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0301-4622%2896%2902197-7
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
The price of lost freedom: entropy of bimolecular complex formation
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0301-4622%2896%2902197-7
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Backbone dynamics of the glucocorticoid receptor DNA-binding domain
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0301-4622%2896%2902197-7
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
A comparison of15N NMR relaxation measurements with a molecular dynamics simulation: Backbone dynamics of the glucocorticoid receptor DNA-binding domain
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0301-4622%2896%2902197-7
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Crystallographic analysis of the interaction of the glucocorticoid receptor with DNA
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0301-4622%2896%2902197-7
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Refined solution structure of the glucocorticoid receptor DNA-binding domain
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0301-4622%2896%2902197-7
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Crystal structure of a CAP-DNA complex: the DNA is bent by 90 degrees
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0301-4622%2896%2902197-7
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Recognition of a DNA operator by the repressor of phage 434: a view at high resolution
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0301-4622%2896%2902197-7
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Effect of non-contacted bases on the affinity of 434 operator for 434 repressor and Cro
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0301-4622%2896%2902197-7
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Nonspecific DNA bending and the specificity of protein-DNA interactions
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0301-4622%2896%2902197-7
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
DNA bending by Cro protein in specific and nonspecific complexes: implications for protein site recognition and specificity
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0301-4622%2896%2902197-7
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Structure of serum response factor core bound to DNA
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0301-4622%2896%2902197-7
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
The X-ray structure of the GCN4-bZIP bound to ATF/CREB site DNA shows the complex depends on DNA flexibility
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0301-4622%2896%2902197-7
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Side-chain conformational entropy in protein folding
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0301-4622%2896%2902197-7
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
The contribution of vibrational entropy to molecular association. The dimerization of insulin.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0301-4622%2896%2902197-7
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
31P NMR spectra of oligodeoxyribonucleotide duplex lac operator-repressor headpiece complexes: importance of phosphate ester backbone flexibility in protein-DNA recognition
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0301-4622%2896%2902197-7
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
31P nuclear magnetic resonance spectra and dissociation constants of lac repressor headpiece.duplex operator complexes: the importance of phosphate backbone flexibility in protein.DNA recognition
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0301-4622%2896%2902197-7
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Comprehensive analysis of hydrogen bonds in regulatory protein DNA-complexes: in search of common principles
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0301-4622%2896%2902197-7
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Studies on gene control regions. VI. The 5- methyl of thymine, a lac repressor recognition site
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0301-4622%2896%2902197-7
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Studies on gene control regions XII. The functional significance of a Lac operator constitutive mutation
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0301-4622%2896%2902197-7
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Interactions between the trp repressor and its operator sequence as studied by base analog substitution
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0301-4622%2896%2902197-7
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Specific purine N7-nitrogens are critical for high affinity binding by the trp repressor
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0301-4622%2896%2902197-7
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Interaction of mutant lambda repressors with operator and non-operator DNA
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0301-4622%2896%2902197-7
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Changing the DNA-binding specificity of a repressor.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0301-4622%2896%2902197-7
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
The enfolding arms of EcoRI endonuclease: role in DNA binding and cleavage
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0301-4622%2896%2902197-7
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
The energetic basis of specificity in the Eco RI endonuclease--DNA interaction.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0301-4622%2896%2902197-7
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Incorporation of a complete set of deoxyadenosine and thymidine analogues suitable for the study of protein nucleic acid interactions into oligodeoxynucleotides. Application to the EcoRV restriction endonuclease and modification methylase
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0301-4622%2896%2902197-7
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Thermodynamics of the glucocorticoid receptor-DNA interaction: Binding of wild-type GR DBD to different response elements
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0301-4622%2896%2902197-7
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Thermodynamics of sequence-specific glucocorticoid receptor-DNA interactions
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0301-4622%2896%2902197-7
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Hydrogen bonding and biological specificity analysed by protein engineering
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0301-4622%2896%2902197-7
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Contributions of the thymine methyl group to the specific recognition of poly- and mononucleotides: an analysis of the relative free energies of solvation of thymine and uracil.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0301-4622%2896%2902197-7
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Parsing the free energy of anthracycline antibiotic binding to DNA
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0301-4622%2896%2902197-7
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Identifiers
DOI
10.1016/S0301-4622(96)02197-7
1 reference
stated in
Europe PubMed Central
PubMed publication ID
17029807
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17029807%20AND%20SRC:MED&resulttype=core&format=json
retrieved
20 December 2019
PubMed publication ID
17029807
1 reference
stated in
Europe PubMed Central
PubMed publication ID
17029807
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17029807%20AND%20SRC:MED&resulttype=core&format=json
retrieved
20 December 2019
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