(Q36631439)

15 August 2017

Free-energy landscape of a chameleon sequence in explicit water and its inherent alpha/beta bifacial property (English)

1 reference

15 August 2017

Free‐energy landscape of a chameleon sequence in explicit water and its inherent α/β bifacial property (English)

1 reference

24 March 2024

1 reference

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A14573865

24 March 2024

1 reference

24 March 2024

author name string

Kazuyoshi Ikeda

1

1 reference

15 August 2017

Junichi Higo

2

1 reference

15 August 2017

language of work or name

English

1 reference

National Center for Biotechnology Information

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=14573865

24 March 2024

publication date

1 November 2003

1 reference

full work available at URL

15 August 2017

https://europepmc.org/articles/pmc2366969?pdf=render

file format

Portable Document Format

online access status

open access

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A14573865

https://europepmc.org/articles/PMC2366969

24 March 2024

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A14573865

https://europepmc.org/articles/PMC2366969?pdf=render

24 March 2024

file format

Portable Document Format

online access status

open access

content deliverer

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A14573865

https://api.wiley.com/onlinelibrary/tdm/v1/articles/10.1110%2Fps.03143803

24 March 2024

1 reference

https://onlinelibrary.wiley.com/doi/pdf/10.1110/ps.03143803

24 March 2024

1 reference

24 March 2024

1 reference

15 August 2017

12

1 reference

15 August 2017

11

1 reference

15 August 2017

2542-2548

1 reference

beta-Hairpins, alpha-helices, and the intermediates among the secondary structures in the energy landscape of a peptide from a distal beta-hairpin of SH3 domain

15 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2366969

Probing the folding free energy landscape of the Src-SH3 protein domain

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2366969

Absolute comparison of simulated and experimental protein-folding dynamics

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2366969

Conformational transition states of a beta-hairpin peptide between the ordered and disordered conformations in explicit water

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2366969

Generalized-ensemble algorithms for molecular simulations of biopolymers

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2366969

Energy landscape of a peptide consisting of alpha-helix, 3(10)-helix, beta-turn, beta-hairpin, and other disordered conformations

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2366969

The Alzheimer's peptide a beta adopts a collapsed coil structure in water

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2366969

Conformational changes in serpins: I. The native and cleaved conformations of alpha(1)-antitrypsin

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2366969

Multicanonical ensemble: A new approach to simulate first-order phase transitions

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2366969

Pathways to a protein folding intermediate observed in a 1-microsecond simulation in aqueous solution

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2366969

Conversion of a beta-strand to an alpha-helix induced by a single-site mutation observed in the crystal structure of Fis mutant Pro26Ala

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2366969

Crystal structure of the yeast MATalpha2/MCM1/DNA ternary complex

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2366969

An alpha to beta conformational switch in EF-Tu

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2366969

Structure of amyloid A4-(1-40)-peptide of Alzheimer's disease

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2366969

Enhanced conformational sampling in Monte Carlo simulations of proteins: application to a constrained peptide

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2366969

Flexibility of the yeast alpha 2 repressor enables it to occupy the ends of its operator, leaving the center free

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2366969

28 June 2018

An RNA-binding chameleon

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2366969

Free energy landscapes of peptides by enhanced conformational sampling.

20 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2366969

A short, disordered protein region mediates interactions between the homeodomain of the yeast alpha 2 protein and the MCM1 protein

20 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2366969

Exploring the energy landscape of a beta hairpin in explicit solvent

20 September 2018

1 reference

12 December 2020

First-principles calculation of the folding free energy of a three-helix bundle protein

1 reference

12 December 2020

Chameleon sequences in the PDB

1 reference

12 December 2020

Context-dependent secondary structure formation of a designed protein sequence

1 reference

12 December 2020

Prediction of peptide conformation by multicanonical algorithm: New approach to the multiple-minima problem

8

1 reference

Comparison of simple potential functions for simulating liquid water

24 March 2024

12

1 reference

Numerical integration of the cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes

24 March 2024

24

1 reference

24 March 2024

Identifiers

DOI

10.1110/PS.03143803

1 reference

release_7mclxap6pbhmfpajujrhfnsbv4

15 August 2017

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/7mclxap6pbhmfpajujrhfnsbv4

24 November 2022

mapped directly with Wikidata item

1 reference

15 August 2017

1 reference