(Q36641579)

English

A Platform for Discovery and Quantification of Modified Ribonucleosides in RNA: Application to Stress-Induced Reprogramming of tRNA Modifications

scientific article published on 17 July 2015

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scholarly article

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Europe PubMed Central

15 August 2017

A Platform for Discovery and Quantification of Modified Ribonucleosides in RNA: Application to Stress-Induced Reprogramming of tRNA Modifications (English)

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15 August 2017

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31 May 2020

Stefanie Kellner

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Erin G. Prestwich

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31 May 2020

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Weiling Maggie Cai

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Yok Hian Chionh

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Chen Gu

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Megan E McBee

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Chee Sheng Ng

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Yan Ling Joy Pang

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Kok Seong Lim

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I Ramesh Babu

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Thomas J Begley

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17 July 2015

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15 August 2017

Methods in Enzymology

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31 May 2020

Highly Predictive Reprogramming of tRNA Modifications Is Linked to Selective Expression of Codon-Biased Genes

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1 reference

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Profiling of ribose methylations in RNA by high-throughput sequencing

1 reference

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tRNA modifications regulate translation during cellular stress

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Dynamic RNA modifications in posttranscriptional regulation

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Quantitative analysis of ribonucleoside modifications in tRNA by HPLC-coupled mass spectrometry

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FTO-mediated formation of N6-hydroxymethyladenosine and N6-formyladenosine in mammalian RNA.

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Translational infidelity-induced protein stress results from a deficiency in Trm9-catalyzed tRNA modifications

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Reprogramming of tRNA modifications controls the oxidative stress response by codon-biased translation of proteins

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The RNA Modification Database, RNAMDB: 2011 update

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Sprouts of RNA epigenetics: the discovery of mammalian RNA demethylases.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4774897

28 June 2018

Decoding system for the AUA codon by tRNAIle with the UAU anticodon in Mycoplasma mobile.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4774897

28 June 2018

Isotope-based analysis of modified tRNA nucleosides correlates modification density with translational efficiency

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4774897

28 June 2018

Rapid, nondenaturing RNA purification using weak anion-exchange fast performance liquid chromatography

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4774897

28 June 2018

Use of lab-on-a-chip technology for protein sizing and quantitation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4774897

28 June 2018

Trm9-catalyzed tRNA modifications link translation to the DNA damage response

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4774897

28 June 2018

Separation of transfer RNA and 5S ribosomal RNA using capillary electrophoresis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4774897

28 June 2018

On the lability of poly(A) sequences during extraction of messenger RNA from polyribosomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4774897

28 June 2018

Precision of RNA separation by polyacrylamide gel electrophoresis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4774897

28 June 2018

Dye label interference with RNA modification reveals 5-fluorouridine as non-covalent inhibitor.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4774897

20 September 2018

Absolute and relative quantification of RNA modifications via biosynthetic isotopomers.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4774897

20 September 2018

Profiling of RNA modifications by multiplexed stable isotope labelling.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4774897

20 September 2018

Hydrophilic interaction ultra-performance liquid chromatography coupled with triple-quadrupole tandem mass spectrometry (HILIC-UPLC-TQ-MS/MS) in multiple-reaction monitoring (MRM) for the determination of nucleobases and nucleosides in ginkgo seeds

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4774897

20 September 2018

Separation and quantification of RNA molecules using size-exclusion chromatography hyphenated with inductively coupled plasma-mass spectrometry

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4774897

20 September 2018

Characterization of nucleosides and nucleobases in natural Cordyceps by HILIC-ESI/TOF/MS and HILIC-ESI/MS.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4774897

20 September 2018

A coordinated codon-dependent regulation of translation by Elongator

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4774897

20 September 2018

Evaluation of core-shell particle columns for ion-pair reversed-phase liquid chromatography analysis of oligonucleotides.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4774897

20 September 2018

A method to extract intact and pure RNA from mycobacteria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4774897

20 September 2018

Identification of 5-hydroxycytidine at position 2501 concludes characterization of modified nucleotides in E. coli 23S rRNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4774897

20 September 2018

Acetic acid denaturing pulsed field capillary electrophoresis for RNA separation.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4774897

20 September 2018

Detection of RNA modifications.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4774897

20 September 2018

Studying the mechanism of RNA separations using RNA chromatography and its application in the analysis of ribosomal RNA and RNA:RNA interactions.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4774897

20 September 2018

Development of an on-line SPE-LC-ESI-MS method for urinary nucleosides: hyphenation of aprotic boronic acid chromatography with hydrophilic interaction LC-ESI-MS.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4774897

20 September 2018

The 3' termini of mouse Piwi-interacting RNAs are 2'-O-methylated.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4774897

20 September 2018

Rapid purification of RNAs using fast performance liquid chromatography (FPLC).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4774897

20 September 2018

Purification of a synthetic oligonucleotide by anion exchange chromatography: method optimisation and scale-up.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4774897

20 September 2018

The role of modifications in codon discrimination by tRNA(Lys)UUU.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4774897

20 September 2018

Absence of 2'-deoxyoxanosine and presence of abasic sites in DNA exposed to nitric oxide at controlled physiological concentrations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4774897

20 September 2018

Accurate translation of the genetic code depends on tRNA modified nucleosides.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4774897

20 September 2018

Complete analysis of tRNA-modified nucleosides by high-performance liquid chromatography: The 29 modified nucleosides of Salmonella typhimurium and Escherichia coli tRNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4774897

20 September 2018

Identification of N6,N6-Dimethyladenosine in Transfer RNA from Mycobacterium bovis Bacille Calmette-Guérin

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4774897

4 December 2018

Analysis of RNA hydrolyzates by liquid chromatography-mass spectrometry

1 reference

https://pubmed.ncbi.nlm.nih.gov/26253965

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A method for the isolation of pure intact RNA from mycobacteria

1 reference

https://pubmed.ncbi.nlm.nih.gov/26253965

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A procedure for the isolation of mammalian messenger ribonucleic acid

1 reference

https://pubmed.ncbi.nlm.nih.gov/26253965

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Reversed-phase and ion-pair separations of nucleotides, nucleosides and nucleobases: analysis of biological samples in health and disease

1 reference

https://pubmed.ncbi.nlm.nih.gov/26253965

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

De novo sequence determination of modified oligonucleotides

1 reference

https://pubmed.ncbi.nlm.nih.gov/26253965

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Preparation and enzymatic hydrolysis of DNA and RNA for mass spectrometry

1 reference

https://pubmed.ncbi.nlm.nih.gov/26253965

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The modification of the wobble base of tRNAGlu modulates the translation rate of glutamic acid codons in vivo

1 reference

https://pubmed.ncbi.nlm.nih.gov/26253965

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Analysis of the Methylation Sites in Yeast Ribosomal RNA

1 reference

https://pubmed.ncbi.nlm.nih.gov/26253965

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Short structured RNAs with low GC content are selectively lost during extraction from a small number of cells

1 reference

https://pubmed.ncbi.nlm.nih.gov/26253965

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A single methyl group prevents the mischarging of a tRNA

1 reference

https://pubmed.ncbi.nlm.nih.gov/26253965

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Is pulsed electric field still effective for RNA separation in capillary electrophoresis?

1 reference

https://pubmed.ncbi.nlm.nih.gov/26253965

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Quantitative enzymatic hydrolysis of tRNAs: reversed-phase high-performance liquid chromatography of tRNA nucleosides

1 reference

https://pubmed.ncbi.nlm.nih.gov/26253965

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Reversed-phase ion-pair liquid chromatography analysis and purification of small interfering RNA

1 reference

https://pubmed.ncbi.nlm.nih.gov/26253965

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Chromatography of nucleosides

1 reference

https://pubmed.ncbi.nlm.nih.gov/26253965

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Ribonucleoside analysis by reversed-phase high-performance liquid chromatography

1 reference

https://pubmed.ncbi.nlm.nih.gov/26253965

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1016/BS.MIE.2015.03.004

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26253965%20AND%20SRC:MED&resulttype=core&format=json

31 May 2020

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26253965%20AND%20SRC:MED&resulttype=core&format=json

31 May 2020

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26253965%20AND%20SRC:MED&resulttype=core&format=json

31 May 2020

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